PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0002ss01220.1

Common Name

LR48_Vigan06g074900

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Trihelix

Protein Properties

Length: 310aa MW: 36331.6 Da PI: 8.4841

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0002ss01220.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	89	5.4e-28	48	129	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++qe+++ i +r e+e+++ ++k++k+lWe vs+kmrergf+rsp+qCk+kw+nl +ryk ++++ ++ s++cp+f++l+ Vang0002ss01220.1 48 QWSQQETREFISIRAELERDFTASKRNKTLWEVVSSKMRERGFRRSPEQCKCKWKNLVNRYKGKETSDPEH----SRQCPFFEELH 129 7**************************************************************999986....899****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	2.6E-4	45	107	IPR001005	SANT/Myb domain
CDD	cd12203	6.19E-27	47	112	No hit	No description
Pfam	PF13837	1.5E-23	47	130	No hit	No description
PROSITE profile	PS50090	7.724	49	105	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MFGGGGEDAF AARLGMVTPS LMNPATSLVM SGEVSAAVRE ERGPAQPQWS QQETREFISI 60 RAELERDFTA SKRNKTLWEV VSSKMRERGF RRSPEQCKCK WKNLVNRYKG KETSDPEHSR 120 QCPFFEELHA VFTQRAHNMQ RLLLESETRS AQTKKGVKRS SGDRSSEELS EDDDEVEYDS 180 EEEKPSRSNT RKRKVDKVGT DKSSSRANNP SNAVNSSTSS IQEMLKEFFQ HQLRMEMQWR 240 EMMERRAHER QLFEQEWRQS MEKLERERLI IEQAWREREE QRRMREESRA EKRDALLTTL 300 LNKLINESN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ebi_A	2e-14	49	115	7	73	DNA binding protein GT-1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0002ss01220.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	0.0	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017426675.1	0.0	PREDICTED: trihelix transcription factor GT-3b-like
TrEMBL	A0A0L9URU2	0.0	A0A0L9URU2_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3T3G0	0.0	A0A0S3T3G0_PHAAN; Uncharacterized protein
STRING	XP_007158125.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1781	33	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	4e-40	Trihelix family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]