PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6DL_5B1D4DBF5.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 272aa MW: 30849.1 Da PI: 8.9013 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.9 | 9.7e-32 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+ Traes_6DL_5B1D4DBF5.2 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 58 79**********************************************95 PP | |||||||
2 | K-box | 105.3 | 7.2e-35 | 78 | 171 | 6 | 99 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 +++ + ++++s++qe++kLk++ e Lqr+qRhllGedL++Ls+keLqqLe+qLe sl+ R++K++l++eq+eel++ke++l ++n++ Traes_6DL_5B1D4DBF5.2 78 DSNGALSETQSWYQEMSKLKAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECSLSLARQRKTQLMMEQVEELRRKERQLGDINRQ 165 344466788******************************************************************************* PP K-box 94 Lrkkle 99 L++kl+ Traes_6DL_5B1D4DBF5.2 166 LKHKLD 171 ****97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.571 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.8E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.23E-45 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 3.92E-33 | 2 | 77 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.9E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.4E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.9E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.9E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 7.8E-31 | 85 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 17.572 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSA 60 GTTKTLERYQ HCCYNAQDSN GALSETQSWY QEMSKLKAKF EALQRTQRHL LGEDLGPLSV 120 KELQQLEKQL ECSLSLARQR KTQLMMEQVE ELRRKERQLG DINRQLKHKL DAEGSNSNNY 180 RAMQQITWAA GTVVDEGAAA YHMQQQQQQH PNHSAAMDCE PTLQIGSRLL IRQPIIFHGA 240 AAPEGRTTSC SGGFFELASC WLACLPISQE TK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 3e-21 | 79 | 174 | 10 | 104 | Developmental protein SEPALLATA 3 |
4ox0_B | 3e-21 | 79 | 174 | 10 | 104 | Developmental protein SEPALLATA 3 |
4ox0_C | 3e-21 | 79 | 174 | 10 | 104 | Developmental protein SEPALLATA 3 |
4ox0_D | 3e-21 | 79 | 174 | 10 | 104 | Developmental protein SEPALLATA 3 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Regulates floral organ identity and floral meristem determinacy. May be involved in the control of flowering time. {ECO:0000269|PubMed:19820190, ECO:0000269|Ref.8}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM502872 | 0.0 | AM502872.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM9A (WM9A gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020155371.1 | 1e-165 | MADS-box transcription factor 6 | ||||
Swissprot | Q6EU39 | 1e-138 | MADS6_ORYSJ; MADS-box transcription factor 6 | ||||
TrEMBL | A0A3B6QGK2 | 0.0 | A0A3B6QGK2_WHEAT; Uncharacterized protein | ||||
STRING | Traes_6DL_5B1D4DBF5.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4187 | 35 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45650.1 | 4e-91 | AGAMOUS-like 6 |