PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BS_D373D1A96.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 639aa    MW: 72399.8 Da    PI: 7.3031
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BS_D373D1A96.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2188.2e-06364386123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C+ Cg +F+ + +Lk+H+++H
  Traes_6BS_D373D1A96.2 364 HSCEECGACFRKPAHLKQHMQSH 386
                            79*******************99 PP
2zf-C2H221.17.9e-07392416123
                            EEET..TTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                            + Cp  dC+ s+ rk++L+rH+ tH
  Traes_6BS_D373D1A96.2 392 FACPleDCPFSYIRKDHLNRHMLTH 416
                            78**********************9 PP
3zf-C2H216.22.9e-05421446123
                            EEET..TTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                            ++Cp   Cgk+Fs k n +rH +  H
  Traes_6BS_D373D1A96.2 421 FTCPleGCGKRFSIKANIQRHVKEmH 446
                            89********************9988 PP
4zf-C2H215.83.9e-05465487323
                            ET..TTTEEESSHHHHHHHHHHT CS
                zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                            C+   C+k F+ +s+Lk+H  +H
  Traes_6BS_D373D1A96.2 465 CQeeGCKKAFKYPSQLKKHEESH 487
                            77779**************9988 PP
5zf-C2H214.30.00012554578223
                            EET..TTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                            +C+   C  sFs+ksnL+ H++  H
  Traes_6BS_D373D1A96.2 554 ECSfdGCECSFSNKSNLTMHMKAcH 578
                            688889****************955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513759.986539IPR002885Pentatricopeptide repeat
PfamPF015352.8E-4736IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.5E-4740IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.85975105IPR002885Pentatricopeptide repeat
PfamPF015350.004180101IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.105.3E-585136IPR011990Tetratricopeptide-like helical domain
PfamPF130414.9E-11105153IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.2106140IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.6E-8108142IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.824141171IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.138177207IPR002885Pentatricopeptide repeat
PfamPF015350.28180204IPR002885Pentatricopeptide repeat
SuperFamilySSF484522.48E-5190273IPR011990Tetratricopeptide-like helical domain
Gene3DG3DSA:1.25.40.105.3E-5206272IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513755.623209239IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.53243277IPR002885Pentatricopeptide repeat
PfamPF015351.1252275IPR002885Pentatricopeptide repeat
SMARTSM0035544318341IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.277364391IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.5E-5364383IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.008364386IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280366386IPR007087Zinc finger, C2H2
SuperFamilySSF576674.57E-11377418No hitNo description
Gene3DG3DSA:3.30.160.601.4E-12384418IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.515392421IPR007087Zinc finger, C2H2
SMARTSM003557.4E-4392416IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280394416IPR007087Zinc finger, C2H2
SuperFamilySSF576674.96E-9402453No hitNo description
Gene3DG3DSA:3.30.160.602.9E-6419446IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.133421451IPR007087Zinc finger, C2H2
SMARTSM003554.0E-4421446IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280423446IPR007087Zinc finger, C2H2
PROSITE profilePS501579.245463488IPR007087Zinc finger, C2H2
SMARTSM003550.039463487IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.1E-6465487IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280465487IPR007087Zinc finger, C2H2
SMARTSM003555.3495520IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280497520IPR007087Zinc finger, C2H2
SMARTSM0035523523544IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.8E-6538575IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.04E-9538595No hitNo description
PROSITE profilePS5015711.011553583IPR007087Zinc finger, C2H2
SMARTSM003550.0062553578IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280555578IPR007087Zinc finger, C2H2
PROSITE profilePS501578.642584610IPR007087Zinc finger, C2H2
SMARTSM003552.2584610IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280586610IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MPVKSTVSWT ALVTGHVQAK QPIRALEIFG RMVLEGHRPT HVTIVGVLSA CADIGSLDLG  60
RVIHGYGSKF NISTNIIVSN ALMDMYAKSG SIEMAFAVFE EVPLKDAFTW TTMISSFTVQ  120
GDGIKALELF EDMLRSGVVP NSVTFVSVLS ACSHAGLIQQ GRELFDKMRR IYNIKPQLEH  180
YGCIVDLLGR GGLLEEAEAL IYDMDVEPDT VIWRSLLSAC LVHGNDRLAE TAGQEIIKRE  240
PGDDGVYVLL WNIYASSDRW KEALDIRKQM LTRNIFKKPG CSWIEVDGGV HEFLMSSGNG  300
IDGDEKSEET HSKDIRRIKC DFCTVVRSKM YLIRAHMVAQ HKDELDASEI YNSNGEKVVH  360
GVEHSCEECG ACFRKPAHLK QHMQSHSKER SFACPLEDCP FSYIRKDHLN RHMLTHEGKL  420
FTCPLEGCGK RFSIKANIQR HVKEMHEEEH ECKIDDTKSN QQVICQEEGC KKAFKYPSQL  480
KKHEESHAKL DYVEVVCCEP GCLKTFTNAK CLKAHNQSCH LYTHCDICGE KHLRKNIKRH  540
LRVHDKVHST ERLECSFDGC ECSFSNKSNL TMHMKACHDQ VRPFECRVAG CGKTFPYKHV  600
RDNHEKSSCH VYVEGDYEEM DEQLRSRRGG GRKRAAVTV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D4e-40121916330PLS9-PPR
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3745270.0AK374527.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3068C12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181263.10.0transcription factor IIIA-like
SwissprotQ84MZ41e-111TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A446VZW50.0A0A446VZW5_TRITD; Uncharacterized protein
STRINGTraes_6BS_D373D1A96.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-109transcription factor IIIA
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]