PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6AS_68775100B.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WRKY | ||||||||
Protein Properties | Length: 189aa MW: 20015.2 Da PI: 6.4995 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 87.5 | 1.2e-27 | 9 | 68 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK++ gs+fprsYYrCt++ gC +kkkv+r ++dp + e+tY g+H + Traes_6AS_68775100B.1 9 DDGYTWRKYGQKDILGSRFPRSYYRCTHKnyyGCDAKKKVQRLDDDPFMYEVTYCGSHSC 68 8***************************99999*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.9E-26 | 7 | 68 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.45E-25 | 7 | 68 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.5E-37 | 8 | 70 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.3E-26 | 9 | 68 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.448 | 9 | 67 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MGNIELPPDD GYTWRKYGQK DILGSRFPRS YYRCTHKNYY GCDAKKKVQR LDDDPFMYEV 60 TYCGSHSCLT STTPLLNFPT ATATATATNS PTAATGSGLA PADHFMAPTE QAAVSTSMHL 120 GVGWMPASFQ GVVAGSGAGG GSSAGMQTSV STAARDTDYP ALDLADVMFN SGGSVGMDGI 180 FSSHHRRDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 8e-20 | 9 | 68 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00304 | DAP | Transfer from AT2G40740 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK287817 | 2e-77 | AK287817.1 Oryza sativa Japonica Group cDNA, clone: J065181J09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020192752.1 | 1e-105 | WRKY transcription factor 55-like | ||||
Swissprot | Q9SHB5 | 1e-35 | WRK55_ARATH; WRKY transcription factor 55 | ||||
TrEMBL | A0A3B6NL06 | 1e-135 | A0A3B6NL06_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446V4K7 | 1e-135 | A0A446V4K7_TRITD; Uncharacterized protein | ||||
STRING | Traes_6AS_68775100B.1 | 1e-139 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9796 | 33 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40740.1 | 2e-35 | WRKY DNA-binding protein 55 |
Publications ? help Back to Top | |||
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