PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_E94233A40.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 671aa    MW: 73047.4 Da    PI: 7.5508
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_E94233A40.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.85.1e-08576625147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                            r +++  E ellv+av++lG g+Wk + ++     + Rt  ++k++w ++
  Traes_6AL_E94233A40.1 576 RRPFSVAEVELLVEAVELLGFGRWKNVKNHAFrdnEERTYVDLKDKWKNL 625
                            678999*************************99**99**********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542363.11E-7401474IPR029071Ubiquitin-related domain
PROSITE profilePS500539.003406470IPR000626Ubiquitin domain
Gene3DG3DSA:3.10.20.905.9E-4407474No hitNo description
CDDcd017690.00765410475No hitNo description
PROSITE profilePS5129416.171571630IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-10572627IPR009057Homeodomain-like
SuperFamilySSF466891.37E-12573628IPR009057Homeodomain-like
SMARTSM007171.0E-8575628IPR001005SANT/Myb domain
PfamPF002498.1E-6576625IPR001005SANT/Myb domain
CDDcd116602.06E-15577627No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MVFRKKSEGG SVVRRPRKPR DTTLAPVKRS ARLKKKQMYA LDLLATVAES LSSDEDDYST  60
ESDQDGAEAS HNSYRIAVKS EQFDEAPQLN STALENDCSR GYTVGCDGIC ASLGQTSIRK  120
TEDLSTQNVA DTVEGSLIEK ADADNLLTQN IADAAAEPLI EKKPDVFAEG SLVSCTKPSL  180
LDCGLGTIPE YGTIGVCHPC FPTSADVKQV HQATPAIIRS LVDGNAAALH GLVDTMDLDV  240
KPSVLNSESS SGVHLGGHDN GHKASPLYPV QVQHAADIDN DEKSTRCVLP STSGSKGGYL  300
SYKGDCRTRR LLSTRMRKAA RNKMCGELPN KGSKFCGKKI SATRRRAQMQ RMLKTKKVVE  360
CYSAQPSDEG VLTETSGTSC SRGGQDPTCA SESSQRKPCA SEGCNVKFII KSFNIPELSI  420
EVPENSTVGS LKRIVMDAVT SKIEGSLSVS VLLQGKIIQD DNKTLHQAGI CHGAKPDSIG  480
FTLECEAKQD SRPSGLAPEE MDSAGPSVVN PLSKIKFEQP FISCTLGDYP YEGAAQVRSE  540
ICQAIVPYGT SNPDALAIVP VVPRSRQRDF GQRRKRRPFS VAEVELLVEA VELLGFGRWK  600
NVKNHAFRDN EERTYVDLKD KWKNLVHTAS IPPQLRRGRA IPPQDLLDRV LAAQAYWTVH  660
HAKRDEEEGR D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2roh_A3e-425476593113Telomere binding protein-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds the telomeric double-stranded 5'TTTAGGG-3' repeat and regulates telomere length and structure. {ECO:0000269|PubMed:10811811, ECO:0000269|PubMed:17586654}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3733770.0AK373377.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3028O09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194084.10.0telomere-binding protein 1-like
SwissprotQ9LL450.0TBP1_ORYSJ; Telomere-binding protein 1
TrEMBLA0A3B6NWU70.0A0A3B6NWU7_WHEAT; Uncharacterized protein
STRINGTraes_6AL_E94233A40.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108241215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.16e-53TRF-like 2
Publications ? help Back to Top
  1. Yu EY, et al.
    Sequence-specific DNA recognition by the Myb-like domain of plant telomeric protein RTBP1.
    J. Biol. Chem., 2000. 275(31): p. 24208-14
    [PMID:10811811]
  2. Hong JP, et al.
    Suppression of RICE TELOMERE BINDING PROTEIN 1 results in severe and gradual developmental defects accompanied by genome instability in rice.
    Plant Cell, 2007. 19(6): p. 1770-81
    [PMID:17586654]
  3. Ko S, et al.
    Solution structure of the DNA binding domain of rice telomere binding protein RTBP1.
    Biochemistry, 2009. 48(5): p. 827-38
    [PMID:19152316]
  4. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  5. Mukherjee K,Pandey DM,Vidyarthi AS
    In silico characterization and analysis of RTBP1 and NgTRF1 protein through MD simulation and molecular docking - A comparative study.
    Interdiscip Sci, 2015.
    [PMID:25663113]
  6. Mukherjee K,Pandey DM,Vidyarthi AS
    In Silico Characterization and Analysis of RTBP1 and NgTRF1 Protein Through MD Simulation and Molecular Docking: A Comparative Study.
    Interdiscip Sci, 2015. 7(3): p. 275-86
    [PMID:26289405]