PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6AL_BA6465E822.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 203aa MW: 22818.2 Da PI: 6.4346 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.8 | 1.8e-05 | 10 | 35 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + Cp Cg++F++ s L+ H r H Traes_6AL_BA6465E822.1 10 HMCPypECGRRFTQESKLRAHFRAqH 35 689999***************99877 PP | |||||||
2 | zf-C2H2 | 13.1 | 0.0003 | 76 | 101 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+Cp C k + + + L+ H+++ H Traes_6AL_BA6465E822.1 76 YVCPydGCAKAYIHEYKLNLHLKKeH 101 9**********************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.72E-6 | 1 | 36 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.9E-8 | 10 | 32 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0077 | 10 | 35 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.032 | 10 | 35 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 12 | 35 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.3E-8 | 68 | 98 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.69E-5 | 71 | 99 | No hit | No description |
SMART | SM00355 | 0.012 | 76 | 101 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.871 | 76 | 106 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 78 | 101 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MKTHFADNYH MCPYPECGRR FTQESKLRAH FRAQHEKSGL QNPGGPVINR NALGDHPHNT 60 AKSLVTPPVP SADRPYVCPY DGCAKAYIHE YKLNLHLKKE HPNHYSDAGA QAGPSRGTIL 120 KNSRRSKPNL TTSMPLAKIP KRSGYTVPSP AVSIPEEHQW PRKVLYEDDS EETEEEGDNL 180 EEVGLRYRAA SGGDDDEETE EEE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK356960 | 1e-112 | AK356960.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1042P17. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020149431.1 | 1e-124 | uncharacterized zinc finger protein At4g06634 isoform X1 | ||||
TrEMBL | A0A3B6NR40 | 1e-147 | A0A3B6NR40_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446VED6 | 1e-147 | A0A446VED6_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A446VEE6 | 1e-149 | A0A446VEE6_TRITD; Uncharacterized protein | ||||
STRING | Traes_6AL_BA6465E82.1 | 1e-151 | (Triticum aestivum) | ||||
STRING | Traes_6AL_BA6465E821.1 | 1e-151 | (Triticum aestivum) | ||||
STRING | Traes_6AL_BA6465E822.1 | 1e-151 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2094 | 38 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.2 | 1e-30 | C2H2 family protein |
Publications ? help Back to Top | |||
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