PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_6CBF61AA4.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 123aa    MW: 12853.3 Da    PI: 6.7721
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_6CBF61AA4.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.7e-052244123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C++C k F++   L  H r+H
  Traes_5DL_6CBF61AA4.1 22 HRCSICQKEFPTGQALGGHKRKH 44
                           79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.78E-61846No hitNo description
PfamPF139121.6E-122146IPR007087Zinc finger, C2H2
PROSITE profilePS501579.0782244IPR007087Zinc finger, C2H2
PROSITE patternPS0002802444IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
PSAEPATSST AASSDGTTNR VHRCSICQKE FPTGQALGGH KRKHYDGGVG AAASSTELLA  60
AAAAESEVGS TGYGSSAARA FDLNIPAVPE FVWRPCAKGK MMWEDDEEVQ SPLAFKKPRL  120
LTA
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankWHTWZF1A1e-175D16415.1 Triticum aestivum gene for zinc-finger protein WZF1, complete cds.
GenBankWHTWZF1B1e-175D16416.1 Triticum aestivum mRNA for zinc-finger protein WZF1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167815.12e-85zinc finger protein 1
SwissprotQ424302e-84ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A3B6MX143e-83A0A3B6MX14_WHEAT; Uncharacterized protein
TrEMBLA0A453LV333e-83A0A453LV33_AEGTS; Uncharacterized protein
STRINGTraes_5DL_6CBF61AA4.15e-86(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.13e-21salt tolerance zinc finger
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]