PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5DL_4F9BD63F0.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Trihelix

Protein Properties

Length: 416aa MW: 47451.1 Da PI: 6.6282

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5DL_4F9BD63F0.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	82.7	5e-26	92	188	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsesss 77 +Wt+++v++Li+a ++++e+ +++ kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++ t+++++ Traes_5DL_4F9BD63F0.1 92 KWTDSMVKLLITAASYTGEDPGADLgcgrrncamvHKKGKWKAISKVMGERGCNVSPQQCEDKFNDLNKRYKRLTDILGRGtTCKVVE 179 7*******************8633466677888******************************************77* PP trihelix 78 tcpyfdqle 86 + +++d+++ Traes_5DL_4F9BD63F0.1 180 NPALLDRMD 188 ******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.2E-20	90	214	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MQMHGPSSDN PGFNHSQIPG KFPMPMNQVT ASDHLSEFQF REQRKADHHQ VHHHHYPKKD 60 SMSDDEEHGL NEDTTDSHSG KGKKGSAWQR MKWTDSMVKL LITAASYTGE DPGADLGCGR 120 RNCAMVHKKG KWKAISKVMG ERGCNVSPQQ CEDKFNDLNK RYKRLTDILG RGTTCKVVEN 180 PALLDRMDNL SDKLKDDARK ILSSRHLFYE EMCSYHNNNR ISLPEDPALQ RSLQFALRCK 240 EENDMMRGAS GDADEDDQSS DSDYEEDNDE DHQVAHSNKG GLPMQKKMWY TADHEDAGFG 300 NSLSAHECSR RSNPHGITLD INKVVPDGTS LALTQKDLVL QSAELEKQCL KIENEALELA 360 EQRLKWELSS KIKDKELERM RSDNEHMKIE IKRLKLEVRR KELELELKLK GNGSHS

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MQMHGPSSDN PGFNHSQIPG KFPMPMNQVT ASDHLSEFQF REQRKADHHQ VHHHHYPKKD  60
SMSDDEEHGL NEDTTDSHSG KGKKGSAWQR MKWTDSMVKL LITAASYTGE DPGADLGCGR  120
RNCAMVHKKG KWKAISKVMG ERGCNVSPQQ CEDKFNDLNK RYKRLTDILG RGTTCKVVEN  180
PALLDRMDNL SDKLKDDARK ILSSRHLFYE EMCSYHNNNR ISLPEDPALQ RSLQFALRCK  240
EENDMMRGAS GDADEDDQSS DSDYEEDNDE DHQVAHSNKG GLPMQKKMWY TADHEDAGFG  300
NSLSAHECSR RSNPHGITLD INKVVPDGTS LALTQKDLVL QSAELEKQCL KIENEALELA  360
EQRLKWELSS KIKDKELERM RSDNEHMKIE IKRLKLEVRR KELELELKLK GNGSHS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020196126.1	0.0	uncharacterized protein LOC109781950
Refseq	XP_020196127.1	0.0	uncharacterized protein LOC109781950
Refseq	XP_020196128.1	0.0	uncharacterized protein LOC109781950
TrEMBL	A0A3B6MNK5	0.0	A0A3B6MNK5_WHEAT; SAB
TrEMBL	A0A453K8U8	0.0	A0A453K8U8_AEGTS; Uncharacterized protein
TrEMBL	M8BQV9	0.0	M8BQV9_AEGTA; Uncharacterized protein
STRING	Traes_5DL_4F9BD63F0.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2920	38	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-93	sequence-specific DNA binding transcription factors

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]