PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_D45BBFEBC.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 273aa    MW: 29429 Da    PI: 6.7392
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_D45BBFEBC.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.8e-1398143454
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            +h e+Er+RRd++N +f  Lr  +P+       +++Ka+ L  Av YI +L
  Traes_5BL_D45BBFEBC.1  98 SHVEAERQRRDKLNRRFCDLRAAVPNV-----SRMDKASLLADAVAYITDL 143
                            89************************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.72E-1693156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.07294143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.35E-1397148No hitNo description
Gene3DG3DSA:4.10.280.101.4E-1598157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-1098143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-11100149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MDELLSPYAP FFPSSPPSQF STAEGHHHHV FELASCEVPE QWLVGDTVVP AKSEHGDYVW  60
PAGSSSLSPD LPGDSLQPST TKRRGRKPGP RPDGPAVSHV EAERQRRDKL NRRFCDLRAA  120
VPNVSRMDKA SLLADAVAYI TDLRSRVARL EVEGRQAAAA RCEAWNASAS SSWGGHAGAS  180
LHHVAADDVV EVRMVGKDAA AVRMMSPGQA PHAPARLMSA LRSLELQVQH ACVNRVEGVT  240
VQDVVVDVPA ALQDDDGDGA LRSALLQRLR YTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-2097156766Transcription factor MYC2
5gnj_B8e-2097156766Transcription factor MYC2
5gnj_E8e-2097156766Transcription factor MYC2
5gnj_F8e-2097156766Transcription factor MYC2
5gnj_G8e-2097156766Transcription factor MYC2
5gnj_I8e-2097156766Transcription factor MYC2
5gnj_M8e-2097156766Transcription factor MYC2
5gnj_N8e-2097156766Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0065252e-53AP006525.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0498F03.
GenBankAP0072542e-53AP007254.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, fosmid clone:OSJNOa211K08.
GenBankAP0149652e-53AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126172e-53CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194713.11e-158transcription factor bHLH14-like
TrEMBLA0A3B6LQD90.0A0A3B6LQD9_WHEAT; Uncharacterized protein
STRINGTraes_5BL_D45BBFEBC.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.15e-26bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]