PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5BL_C330C8714.3

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Trihelix

Protein Properties

Length: 273aa MW: 30652.9 Da PI: 5.7523

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5BL_C330C8714.3	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	80.1	3.2e-25	31	127	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsesss 77 +Wt+++v++L+++ ++++e+ +++ kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++ t+++++ Traes_5BL_C330C8714.3 31 KWTDSMVKLLVTLASYTGEDPGADLgcgrrncamvHKKGKWKAISKVMGERGCNVSPQQCEDKFNDLNKRYKRLTDILGRGrTCKVVE 118 7*******************8633466677888****************************************9989* PP trihelix 78 tcpyfdqle 86 + +++d+++ Traes_5BL_C330C8714.3 119 NPALLDRMD 127 ******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.4E-19	29	153	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MSDDEEHGLN EDTTDSHSGK GKKGSTWQRM KWTDSMVKLL VTLASYTGED PGADLGCGRR 60 NCAMVHKKGK WKAISKVMGE RGCNVSPQQC EDKFNDLNKR YKRLTDILGR GRTCKVVENP 120 ALLDRMDNLS DKLKDDARKT LSSRHLFYEE MCSYHNNNRI SLPEDPALQH SLQFALRCKE 180 ENDMMRGASG DADEDDQSSD SDYEEDNDED HHVAHSNKGG LPMQKKMRYT ADHEDASFGN 240 SLSAHECSRR TNPHGIALDI NEVVPDGTSL ALT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020196126.1	0.0	uncharacterized protein LOC109781950
Refseq	XP_020196127.1	0.0	uncharacterized protein LOC109781950
Refseq	XP_020196128.1	0.0	uncharacterized protein LOC109781950
TrEMBL	A0A3B6LJ47	0.0	A0A3B6LJ47_WHEAT; SAB
STRING	Traes_5BL_C330C8714.3	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2920	38	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	8e-76	sequence-specific DNA binding transcription factors

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]