PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_81FD6E89B.9
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Trihelix
Protein Properties Length: 413aa    MW: 47344.5 Da    PI: 7.9059
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_81FD6E89B.9genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.55.6e-21117197286
               trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                            W++ e+++Li++++++++rlrrg+lk+++We+v++ +  r +g +++ +qC++k+e+l+kry+ ++++         s +p+f+++e
  Traes_5BL_81FD6E89B.9 117 WSDGETMHLIDVYEDRWTRLRRGQLKAHQWEDVAADVtrRCGGQRKTGTQCRHKLEKLRKRYRTEAARPVT------SLWPFFRRME 197
                            *************************************877889999******************9998885......68*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-20115199No hitNo description
SMARTSM005954.3E-5124204IPR006578MADF domain
Gene3DG3DSA:1.10.601.102.5E-5197383No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
FQQGVKVRGL FHTSQTGWAH RSVWPNRVAP PVSERRTGPT IHPREPHQPP RKNRTHHRPW  60
RPRSPLSPRP PPHPPPPPFT PPPLPPSLFP PDPDLNRRPP PRGHPMEARK SAPGQPWSDG  120
ETMHLIDVYE DRWTRLRRGQ LKAHQWEDVA ADVTRRCGGQ RKTGTQCRHK LEKLRKRYRT  180
EAARPVTSLW PFFRRMERLE RGPVPVSTNS FPASPPASDD DQDQDQDHDL DLDLDQEEEE  240
EDEEEEEDGE EDQEEEEEEQ LLVARNRSIN GLVRDAGGFR GHQQQQQRRR PSPPAVTLST  300
APPRKRVSYE AAMFQSKAAA ADRVKAEEAP AVDHHSVAGV LRDIGEGIKR LERRRMEVQW  360
EIERGWKETE ARSNQMLQDA QRQLQDTLAT LPPTGKKARR DHGSSADGLQ EAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158922.11e-157trihelix transcription factor ASIL1-like
TrEMBLA0A3B6LZ330.0A0A3B6LZ33_WHEAT; Uncharacterized protein
TrEMBLA0A446UYQ90.0A0A446UYQ9_TRITD; Uncharacterized protein
STRINGTraes_5BL_81FD6E89B.90.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100782933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.14e-22Trihelix family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]