PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_0A3D332A8.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 339aa    MW: 37003.3 Da    PI: 6.3172
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_0A3D332A8.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.22.9e-27121181158
                            ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                            +dDg++WrKYGqK++ g+++pr+YYrCt++   gC ++k+v+r++edp +++++Y+geH++
  Traes_5BL_0A3D332A8.1 121 VDDGHSWRKYGQKDILGAKHPRGYYRCTHRksqGCAATKQVQRADEDPALFDVIYHGEHTC 181
                            59***************************98899*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-27115182IPR003657WRKY domain
PROSITE profilePS5081122.504116179IPR003657WRKY domain
SuperFamilySSF1182901.02E-24119181IPR003657WRKY domain
SMARTSM007741.6E-39121183IPR003657WRKY domain
PfamPF031065.3E-27122181IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MESVDENGGS RLVVTELGYI KELVRQLDVN LGGCPDHCKR LAAQIFAVTE RSIGMIRSGH  60
FDSRKRSAAG LDSPPFSATP SPLSDVSGMP FHTNNKKRKT MEKRKHQVRV SSEGGGAETP  120
VDDGHSWRKY GQKDILGAKH PRGYYRCTHR KSQGCAATKQ VQRADEDPAL FDVIYHGEHT  180
CVHKTVAAAA AMVQPAEENP DARRHLQNLS TSLTVNTEGL TAGHQGCSTT TSFCFSSQAA  240
GVLTMPQEHY PFSMPSTPEN CFGQGASLST SLEPSPVTSD SNRFSMSPFQ AEWRARSEYD  300
EVVSALVAAG TMPALTMEME EETAFSLDEF EFDVSCFLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-22121181868OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3770660.0AK377066.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3147D20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200629.10.0WRKY transcription factor WRKY62-like
TrEMBLA0A3B6LLK30.0A0A3B6LLK3_WHEAT; Uncharacterized protein
TrEMBLA0A446U7U20.0A0A446U7U2_TRITD; Uncharacterized protein
STRINGTraes_5BL_0A3D332A8.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.23e-36WRKY family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]