PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5AL_10E85D5B3.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 601aa MW: 67435.5 Da PI: 6.9606 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 44.5 | 5e-14 | 55 | 133 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn Y+ e+GF +r ks+++++ g +++ +C + gk++ k+ r++C+a +++ +++d+ w+vt+ ++ HnH+ Traes_5AL_10E85D5B3.1 55 DFYNLYSWEMGFGIRYGKSRRNTKGG-KCMQEITCVNAGKPNMGGKS----------RRCECTALIRLLRTDDNGWYVTQHRKVHNHA 131 6*********************8777.66789**********98877..........9*****************************9 PP FAR1 89 la 90 ++ Traes_5AL_10E85D5B3.1 132 FS 133 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-9 | 55 | 133 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 601 aa Download sequence Send to blast |
MPRVRRGRIP DEREPDAQRV SALEKALTGF AERQTDVVVN PTVGTCFDSI TEAYDFYNLY 60 SWEMGFGIRY GKSRRNTKGG KCMQEITCVN AGKPNMGGKS RRCECTALIR LLRTDDNGWY 120 VTQHRKVHNH AFSTTYGNKV HWPSHKHLDK YTRDLVRQLR HNNVNLGVYD TIASFFGRME 180 NVPFNKRSIR TLCGEVIREQ AVDDARKTME TAAASGERPE NHTGEETTFN CMGLASTTVG 240 SPNMPVEPLR YPEQDDTHSN AEAGRLADLL LAFGDCHLVL KSCTYDDLIN SNGTMSGLEE 300 AVKAVTPHLQ QGIFGDLWSR AHNSGGVVSA QVLTIKDLFR FTRWLTTTTG QHNLRCVQQR 360 AKLVNSGKAV LEPEQIALLH LYQAENDEYS VKMNKLQGER DAKIAQYMAK IDEARKSFEV 420 SIQAAKQHYP VSASYVALDS NELRAQCWTM YLAQCRKEAK DLNAKASNIV EKYGPEVIQR 480 HLFEFCSQET NRQALLKYAQ TKVNNLKEAG DARGEDTLHD YMTLLDIEKA YALLAAEEQI 540 ANCPDTCGGS EDADRGNINN IIARGEAADG ARGDGQDGGE GASEGPPRQK RQRNDQDYVW 600 W |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK358874 | 0.0 | AK358874.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1084N18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188421.1 | 0.0 | uncharacterized protein LOC109774115 | ||||
TrEMBL | A0A446SX90 | 0.0 | A0A446SX90_TRITD; Uncharacterized protein | ||||
STRING | Traes_5AL_10E85D5B3.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP619 | 19 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06250.1 | 1e-10 | FAR1-related sequence 7 |
Publications ? help Back to Top | |||
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