PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DL_3140A8240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WRKY | ||||||||
Protein Properties | Length: 206aa MW: 22911.5 Da PI: 8.1472 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 65.3 | 9.7e-21 | 33 | 94 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 +Dg++WrKYG K++++ +fpr YYrCt++ +Cp++k+++++ ++dp + ++tY +eH ++ Traes_4DL_3140A8240.1 33 NDGHQWRKYGEKKINNCNFPRYYYRCTYKdnmNCPATKQIQQKdHSDPPLYQVTYYNEHSCN 94 8***************************99999*******875267*************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.6E-23 | 20 | 94 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.8E-22 | 26 | 94 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 15.847 | 27 | 96 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.9E-30 | 32 | 95 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.6E-24 | 33 | 93 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MSPVPSPNQS HLLGHGSRKE KRMRKVDTFA PHNDGHQWRK YGEKKINNCN FPRYYYRCTY 60 KDNMNCPATK QIQQKDHSDP PLYQVTYYNE HSCNSAFLAL TPTEFQLQTA SGKAVSICFD 120 SSGAQEPGAN ASSPSSSAAP RGTPSECKNK PLALRSEALS SWAPGVVEQK TACADLQSCS 180 TECQDAYISE DIDAGRFGSI RFFHFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 9e-14 | 33 | 93 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU665455 | 0.0 | EU665455.1 Triticum aestivum WRKY40 transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020174485.1 | 1e-156 | probable WRKY transcription factor 24 | ||||
TrEMBL | A0A3B6JKS5 | 1e-154 | A0A3B6JKS5_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453I6Z2 | 1e-154 | A0A453I6Z2_AEGTS; Uncharacterized protein | ||||
TrEMBL | M8BXG8 | 1e-154 | M8BXG8_AEGTA; Putative WRKY transcription factor 46 | ||||
STRING | EMT29685 | 1e-155 | (Aegilops tauschii) | ||||
STRING | Traes_4DL_3140A8240.1 | 1e-155 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2032 | 35 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46400.1 | 2e-18 | WRKY DNA-binding protein 46 |
Publications ? help Back to Top | |||
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