PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BS_FE945D2FC.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 220aa MW: 23135.1 Da PI: 8.3074 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.7 | 0.00019 | 77 | 99 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk Fs+ L H +H Traes_4BS_FE945D2FC.2 77 HRCSVCGKAFSSYQALGGHKASH 99 79**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 7.6E-13 | 77 | 101 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 6.1E-4 | 77 | 99 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.471 | 77 | 104 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.015 | 77 | 99 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 4.22E-10 | 77 | 99 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 79 | 99 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.22E-10 | 136 | 163 | No hit | No description |
Pfam | PF13912 | 3.8E-14 | 140 | 165 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.12 | 141 | 163 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.349 | 141 | 163 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 143 | 163 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MAVDAVRDAA AMPSPAVSEE EEGQLRCDEG WGKRRRPRRQ RQRAPSEEEH LALSLLMLAR 60 GHRDRHLLGS SEPAQEHRCS VCGKAFSSYQ ALGGHKASHR PKPAPAGADE PAATTAASPA 120 ASSSTTSSGA GAGAGGGGKV HECSVCKKTF PTGQALGGHK RCHYEGPIGA SAVASRGFDL 180 NLPAMPDIVT ERERCMPAPA DEEEVLSPLA FKKPRLMIPA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Potential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK354744 | 1e-156 | AK354744.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1010K21. | |||
GenBank | AK361062 | 1e-156 | AK361062.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1131G20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020173392.1 | 1e-120 | zinc finger protein 1-like | ||||
Swissprot | Q42430 | 4e-42 | ZFP1_WHEAT; Zinc finger protein 1 | ||||
TrEMBL | A0A3B6IL20 | 1e-156 | A0A3B6IL20_WHEAT; Uncharacterized protein | ||||
STRING | Traes_4BS_FE945D2FC.2 | 1e-157 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1022 | 36 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27730.1 | 7e-32 | salt tolerance zinc finger |
Publications ? help Back to Top | |||
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