PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BL_5B2AF2556.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 154aa MW: 16440.2 Da PI: 8.9637 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.4 | 3.5e-13 | 62 | 110 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I+d r +r+++g+f ++ Aa+a++ a+++++g Traes_4BL_5B2AF2556.1 62 SRFKGVVPQP-NGRWGAQIYD------RhARVWIGTFPDEDAAARAYDVAALRYRG 110 789***9788.8*********......44**********99*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.15E-17 | 62 | 119 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.9E-8 | 62 | 110 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-19 | 63 | 119 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-21 | 63 | 124 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.811 | 63 | 118 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.10E-12 | 63 | 118 | No hit | No description |
PRINTS | PR00367 | 5.4E-7 | 64 | 75 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-7 | 100 | 120 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MGVQILSSTP EHSSQHSSGA STATTESGAA GRLPTTLGLP VAIPDEAVTS RSASASAQWA 60 SSRFKGVVPQ PNGRWGAQIY DRHARVWIGT FPDEDAAARA YDVAALRYRG LDAATNFPRT 120 ASSTELAFLA AHSKAEIVDM LRKHTYSDEL RRGL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020191174.1 | 2e-79 | AP2/ERF and B3 domain-containing protein Os01g0141000-like isoform X2 | ||||
Refseq | XP_020200372.1 | 2e-79 | AP2/ERF and B3 domain-containing protein Os01g0141000-like isoform X2 | ||||
Refseq | XP_020201147.1 | 2e-79 | AP2/ERF and B3 domain-containing protein Os01g0141000-like isoform X2 | ||||
Swissprot | Q9LS06 | 4e-44 | RAVL4_ARATH; AP2/ERF and B3 domain-containing transcription factor ARF14 | ||||
TrEMBL | A0A3B6IWE8 | 1e-104 | A0A3B6IWE8_WHEAT; Uncharacterized protein | ||||
STRING | Traes_4BL_5B2AF2556.1 | 1e-108 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18707 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25730.1 | 5e-33 | ethylene response DNA binding factor 3 |
Publications ? help Back to Top | |||
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