PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BL_3B919C814.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 433aa MW: 46096.6 Da PI: 8.4997 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.7 | 9e-05 | 190 | 213 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg++ s + +L+ H+ + H Traes_4BL_3B919C814.1 190 FPCKVCGEVLSKPQQLELHQAMkH 213 89******************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.037 | 190 | 218 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 192 | 213 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 1.06E-9 | 215 | 432 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 1.4E-6 | 245 | 431 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MAGGARCRAL LRGFLSLFFV MFLHIGHAGC CFSPGSASQQ HEEDDAGAAS SSSSSKRRKI 60 SPLAFSPAVS SSTGVEERAG ARRRARHVSS LATSLRCYIH RIFSSAGRKN SVPGGEEQDE 120 AVTTTLSSPL AQSVTQRQAS VVLSTPSSPC ASPFLSPMSP QSLSVTPLVP CSPLATRQLS 180 RSFAARGDLF PCKVCGEVLS KPQQLELHQA MKHSLSELTH LDSSMNIIRM IFLAGWGLSP 240 PGAGDPPAVS RILRIHHNPR ALSRFEEYRD LVRSRAARRC AGASGAVVEE RCIADGNERL 300 RFHCATMLCS LGAGVCGSPY CCTCTILRHG FAGKQADVDG IATYSCGWAA HASLPDEVER 360 EFAFLQVRRA MLVCRVVAGR VVRGGDGDGD KVAYDSMVPV PPGGGGRGGE DDAELLVFNP 420 RAVLPCFVIM YGS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC231815 | 0.0 | AC231815.1 Oryza minuta clone OM__Ba0073C01, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020153470.1 | 0.0 | uncharacterized protein LOC109738783 | ||||
TrEMBL | A0A3B6IUB2 | 0.0 | A0A3B6IUB2_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446S8J9 | 0.0 | A0A446S8J9_TRITD; Uncharacterized protein | ||||
STRING | Traes_4BL_3B919C814.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10517 | 30 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29660.1 | 3e-57 | C2H2 family protein |
Publications ? help Back to Top | |||
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