PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3DL_678D51EAD.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WRKY | ||||||||
Protein Properties | Length: 68aa MW: 7826.82 Da PI: 10.5709 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 56.6 | 5e-18 | 30 | 68 | 1 | 36 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EE CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkk 36 ldDg++WrKYGqK++ g+++pr+Y+rCt++ gC + k Traes_3DL_678D51EAD.1 30 LDDGFSWRKYGQKDILGAKYPRAYFRCTHRhtqGCYASK 68 59***************************9888898876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.7E-18 | 17 | 68 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.1E-16 | 24 | 68 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 16.88 | 25 | 68 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.6E-12 | 30 | 68 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.4E-15 | 31 | 68 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 68 aa Download sequence Send to blast |
HAAGQSKKRK TQPKWSTQVR VNSVEDVGPL DDGFSWRKYG QKDILGAKYP RAYFRCTHRH 60 TQGCYASK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:20409006). May regulate the early events of leaf senescence (PubMed:17369373, PubMed:20409006). Negatively regulates the expression of ESR/ESP (PubMed:20409006). Together with WRKY46 and WRKY70, promotes resistance to P.syringae, probably by enhancing salicylic acid (SA)- dependent genes. Contributes to the suppression of jasmonic acid (MeJA)-induced expression of PDF1.2 (PubMed:22325892). {ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:20409006, ECO:0000269|PubMed:22325892}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA) (PubMed:22268143, PubMed:22325892). Strong accumulation during leaf senescence (PubMed:22268143). Down-regulated by jasmonate. Triggered by P.syringae (PubMed:22325892). {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11506370, ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:22268143, ECO:0000269|PubMed:22325892}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR827401 | 7e-96 | KR827401.1 Triticum aestivum WRKY50 transcriptional factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020182144.1 | 4e-44 | probable WRKY transcription factor 53 | ||||
Swissprot | Q9SUP6 | 9e-24 | WRK53_ARATH; Probable WRKY transcription factor 53 | ||||
TrEMBL | A0A0M3Q8N6 | 7e-43 | A0A0M3Q8N6_WHEAT; WRKY50 transcriptional factor | ||||
TrEMBL | A0A191XX65 | 3e-43 | A0A191XX65_WHEAT; WRKY transcription factor (Fragment) | ||||
TrEMBL | A0A446NJK9 | 7e-43 | A0A446NJK9_TRITD; Uncharacterized protein | ||||
STRING | EMT08686 | 2e-43 | (Aegilops tauschii) | ||||
STRING | Traes_3DL_678D51EAD.1 | 1e-44 | (Triticum aestivum) | ||||
STRING | TRIUR3_29889-P1 | 1e-43 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3355 | 31 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23810.1 | 4e-26 | WRKY family protein |