PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3B_4F4479FAF.1
Common NameTRAES_3BF095600020CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 347aa    MW: 39633.4 Da    PI: 10.2562
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3B_4F4479FAF.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.0017180202323
                           ET..TTTEEESSHHHHHHHHHHT CS
               zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                           Cp   Cgk F ++  L +H ++H
  Traes_3B_4F4479FAF.1 180 CPveGCGKKFFTHKFLLQHGKVH 202
                           9999***************9988 PP
2zf-C2H212.40.00047229251121
                           EEET..TTTEEESSHHHHHHHHH CS
               zf-C2H2   1 ykCp..dCgksFsrksnLkrHir 21 
                           y+C+   C++sF +k +L  H r
  Traes_3B_4F4479FAF.1 229 YTCTieGCSMSFDTKKELSLHER 251
                           99*******************98 PP
3zf-C2H214.50.0001253276223
                           EET..TTTEEESSHHHHHHHHHHT CS
               zf-C2H2   2 kCp..dCgksFsrksnLkrHirtH 23 
                           +Cp   Cgk F ++ +L +H ++H
  Traes_3B_4F4479FAF.1 253 TCPvkGCGKKFFTHKYLLQHRKVH 276
                           79999*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035522155177IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.746178207IPR007087Zinc finger, C2H2
SMARTSM0035523178202IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.8E-4179202IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280180202IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.5E-4228251IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035511229251IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.819252281IPR007087Zinc finger, C2H2
SMARTSM003550.56252276IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-6253280IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280254276IPR007087Zinc finger, C2H2
SuperFamilySSF576674.11E-10268310No hitNo description
Gene3DG3DSA:3.30.160.606.1E-8281306IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.429282311IPR007087Zinc finger, C2H2
SMARTSM003550.031282306IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280284306IPR007087Zinc finger, C2H2
SuperFamilySSF576671.83E-7300334No hitNo description
Gene3DG3DSA:3.30.160.605.2E-8307334IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.868312343IPR007087Zinc finger, C2H2
SMARTSM003552.9312338IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280314338IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MAVEVTTDTK RPRLAKGYSS KALKGVAEVS HPSPTAVVPR VSSRIADRAN RLKSEMTEEP  60
KATSHSRTRP PKKFEVEAKK QMKMRKEDKM MAPTAPKDDE ERPSATKGGP SVGPATKLEF  120
SQRKRRTRTD TMKQLKKATG EERTPRDHPM HVEGYTCSIE GCSMSFDTRN KLSLHELDMC  180
PVEGCGKKFF THKFLLQHGK VHIETTKQLK KATGEERAPR DHRMRVEGYT CTIEGCSMSF  240
DTKKELSLHE RDTCPVKGCG KKFFTHKYLL QHRKVHTDDR PLKCPWEGCD VAFKWAWART  300
EHLSVHTGDR PYVCREPGCA ETFRFISDFS RHKRETGHST KQTKTKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A3e-6222834422138Lysine-specific demethylase REF6
6a58_A3e-6222834422138Lysine-specific demethylase REF6
6a59_A3e-6222834422138Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121126QRKRRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164795.10.0lysine-specific demethylase JMJ705-like
TrEMBLA0A077S3050.0A0A077S305_WHEAT; Uncharacterized protein
STRINGTraes_3B_4F4479FAF.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53463246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.15e-60relative of early flowering 6
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]