PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3AL_6E92D4E1F.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WRKY | ||||||||
Protein Properties | Length: 80aa MW: 9117.11 Da PI: 9.2097 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 88.7 | 5e-28 | 8 | 69 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK++ g+++pr+Y+rCt++ gC + k+v+r++ dp +++++Y+g+H++ Traes_3AL_6E92D4E1F.1 8 LDDGFSWRKYGQKDILGAKYPRAYFRCTHRhtqGCYASKQVQRAHGDPLLFDVVYHGNHTCA 69 59***************************98999**************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 21.482 | 3 | 66 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.4E-27 | 3 | 69 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.45E-26 | 4 | 69 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.9E-38 | 8 | 70 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-26 | 9 | 68 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 80 aa Download sequence Send to blast |
SVEDVGPLDD GFSWRKYGQK DILGAKYPRA YFRCTHRHTQ GCYASKQVQR AHGDPLLFDV 60 VYHGNHTCAQ GKHSNSQRPQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 8e-22 | 5 | 68 | 5 | 68 | OsWRKY45 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR827401 | 1e-131 | KR827401.1 Triticum aestivum WRKY50 transcriptional factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020182144.1 | 3e-52 | probable WRKY transcription factor 53 | ||||
Swissprot | Q8H0Y8 | 8e-31 | WRK41_ARATH; Probable WRKY transcription factor 41 | ||||
TrEMBL | A0A0M3Q8N6 | 2e-53 | A0A0M3Q8N6_WHEAT; WRKY50 transcriptional factor | ||||
TrEMBL | A0A446NJK9 | 2e-53 | A0A446NJK9_TRITD; Uncharacterized protein | ||||
STRING | Traes_3AL_6E92D4E1F.1 | 2e-54 | (Triticum aestivum) | ||||
STRING | TRIUR3_29889-P1 | 5e-54 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3355 | 31 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.1 | 3e-33 | WRKY family protein |
Publications ? help Back to Top | |||
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