PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_1DL_5BAB0B6BC.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

WRKY

Protein Properties

Length: 135aa MW: 14931.9 Da PI: 10.58

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_1DL_5BAB0B6BC.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.9	9.9e-34	56	114	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s fprsYYrCt+++C+vkk+v+r a+d+++v++tYeg Hnh+ Traes_1DL_5BAB0B6BC.1 56 LDDGYRWRKYGQKAVKNSAFPRSYYRCTHHTCNVKKQVQRLAKDTSIVVTTYEGVHNHP 114 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.0E-34	42	114	IPR003657	WRKY domain
SuperFamily	SSF118290	2.88E-29	48	115	IPR003657	WRKY domain
PROSITE profile	PS50811	28.564	51	116	IPR003657	WRKY domain
SMART	SM00774	7.7E-39	56	115	IPR003657	WRKY domain
Pfam	PF03106	9.0E-27	57	114	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
MVSGVTGAAA PESGAGSSSG VGREETKGKG SARARGSRKA SRPRFAFQTK SENDVLDDGY 60 RWRKYGQKAV KNSAFPRSYY RCTHHTCNVK KQVQRLAKDT SIVVTTYEGV HNHPCEKLME 120 ALNPILRQLQ FLSQL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	7e-27	46	113	7	74	Probable WRKY transcription factor 4
2lex_A	7e-27	46	113	7	74	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ840412	1e-151	DQ840412.1 Hordeum vulgare subsp. vulgare WRKY transcription factor 13 (WRKY13) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020160818.1	6e-97	probable WRKY transcription factor 75
Swissprot	Q9FFS3	1e-56	WRK24_ARATH; Probable WRKY transcription factor 24
TrEMBL	A0A3B6A0U0	7e-97	A0A3B6A0U0_WHEAT; Uncharacterized protein
TrEMBL	A0A452ZM74	9e-95	A0A452ZM74_AEGTS; Uncharacterized protein
TrEMBL	R7W8D5	7e-97	R7W8D5_AEGTA; Putative WRKY transcription factor 24
STRING	EMT13814	1e-97	(Aegilops tauschii)
STRING	Traes_1DL_5BAB0B6BC.1	1e-97	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1100	38	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41570.1	4e-57	WRKY DNA-binding protein 24

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]