PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1BL_1D865A8CC.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WRKY | ||||||||
Protein Properties | Length: 67aa MW: 7928.07 Da PI: 8.0752 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 56.3 | 6.6e-18 | 9 | 46 | 22 | 59 |
EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 22 rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 sYYrCt+++C+vkk+v+r a+d+++v++tYeg Hnh+ Traes_1BL_1D865A8CC.1 9 ESYYRCTHHTCNVKKQVQRLAKDTSIVVTTYEGVHNHP 46 69***********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00774 | 2.6E-8 | 1 | 47 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-14 | 8 | 47 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.4E-13 | 9 | 46 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 7.4E-15 | 9 | 46 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 14.952 | 10 | 48 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 67 aa Download sequence Send to blast |
YDPYIFQSES YYRCTHHTCN VKKQVQRLAK DTSIVVTTYE GVHNHPCEKL MEALNPILRQ 60 LQFLSQL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ840412 | 2e-71 | DQ840412.1 Hordeum vulgare subsp. vulgare WRKY transcription factor 13 (WRKY13) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020160818.1 | 6e-37 | probable WRKY transcription factor 75 | ||||
Swissprot | Q9FFS3 | 4e-32 | WRK24_ARATH; Probable WRKY transcription factor 24 | ||||
TrEMBL | A0A3B5Z381 | 2e-36 | A0A3B5Z381_WHEAT; Uncharacterized protein | ||||
STRING | Traes_1BL_1D865A8CC.1 | 8e-44 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1100 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41570.1 | 2e-34 | WRKY DNA-binding protein 24 |
Publications ? help Back to Top | |||
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