PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g24880
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB
Protein Properties Length: 416aa    MW: 46595.8 Da    PI: 6.8378
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g24880genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.12.4e-142370148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ede l+ +v+++G g+W+++ ++  + R++k+c++rw ++l
        Tp7g24880 23 KGPWTAAEDETLAAYVREYGEGNWNAVQKKTWLARCGKSCRLRWANHL 70
                     79******************************************9986 PP
2Myb_DNA-binding49.87.9e-1676119146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T++E+ l+++++ qlG++ W++ a+ ++ gRt++++k++w++
        Tp7g24880  76 KGSFTADEERLIIQLHSQLGNK-WARMAAQLP-GRTDNEIKNYWNT 119
                      799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.331870IPR017930Myb domain
SMARTSM007171.1E-102272IPR001005SANT/Myb domain
SuperFamilySSF466896.6E-2922117IPR009057Homeodomain-like
PfamPF002495.2E-132370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-222477IPR009057Homeodomain-like
CDDcd001672.95E-102570No hitNo description
PROSITE profilePS5129424.94871125IPR017930Myb domain
SMARTSM007171.8E-1575123IPR001005SANT/Myb domain
PfamPF002491.9E-1476119IPR001005SANT/Myb domain
CDDcd001672.50E-1178121No hitNo description
Gene3DG3DSA:1.10.10.602.0E-2478123IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MILNGGENAG GSHGGGGEVV LKKGPWTAAE DETLAAYVRE YGEGNWNAVQ KKTWLARCGK  60
SCRLRWANHL RPNLRKGSFT ADEERLIIQL HSQLGNKWAR MAAQLPGRTD NEIKNYWNTR  120
LKRFQRQGLP LYPPHISPNN HQQQTYLPEP KTASSPLPAS SFAFHTPTEP SPSLRPKRSY  180
DTAFSCFSSK PFYTSSPTAL RVSSPTFLHT HSPPPSSYQS TNPVYSMKPE FPSNQIPYSA  240
SLGVYEVSNF SDDGNCNQNF DDRFTNLNTG LHISTCQLLE DLMEEAETLA GSCRAPKRRL  300
VMAAPEDNNN NNFVLGTFRN FGSSNNLCSQ QGLRPKEEEF LQMNTMQNED IAKLLDWGTE  360
IREISNGQST VIRTEDNIVL DGHQLASLFR VDDDNNNTNK NPTLSSCSWD NLPEIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-30201231103C-Myb DNA-Binding Domain
1msf_C3e-30201231103C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1293298RAPKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:24278028). Binds to 5'-CAACTGTC-3' and/or 5'-TAACAAA-3' motif in target gene promoter to promote their expression (By similarity). Together with MYB101 and MYB120, functions as a male factor that controls pollen tube-synergid interaction in fertilization. Required for pollen tube growth arrest and sperm cell release in the female gametophyte, probably via the regulation of pollen tube-specific gene expression (PubMed:24278028, PubMed:23791732). {ECO:0000250|UniProtKB:O80883, ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g24880
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1760021e-120AF176002.1 Arabidopsis thaliana putative transcription factor (MYB97) mRNA, complete cds.
GenBankDQ6532261e-120DQ653226.1 Arabidopsis thaliana clone 0000013222_0000009532 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006413125.10.0transcription factor MYB97
SwissprotQ9S7730.0MYB97_ARATH; Transcription factor MYB97
TrEMBLV4MNQ30.0V4MNQ3_EUTSA; Uncharacterized protein
STRINGXP_006413125.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99391934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26930.10.0myb domain protein 97
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Zheng Z, et al.
    Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy.
    Plant Physiol., 2017. 174(3): p. 1764-1778
    [PMID:28515145]