PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp7g00880

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

TCP

Protein Properties

Length: 256aa MW: 28476.6 Da PI: 9.0011

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp7g00880	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	100.6	2.8e-31	61	138	3	81
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssss 81 +k++ +++h kv gR+RRvRl+ +caar+F+L++eLG+++d++t++WLl a+p+i+ +tg++ ++ s+ a +s+s+ Tp7g00880 61 IQKKSYKDRHLKVQGRGRRVRLPPLCAARIFQLTRELGHKSDGETLQWLLHHAEPSIISATGSGIKPTSAE-ATDSVSQ 138 6899***********************************************************77777322.3333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.5E-25	65	226	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	23.416	66	120	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MDPKNPNLQN FLNPSPENQD NNEKKKTTKE TEAKVLNTVD GKRKQKQKQK QKEKDEEQHQ 60 IQKKSYKDRH LKVQGRGRRV RLPPLCAARI FQLTRELGHK SDGETLQWLL HHAEPSIISA 120 TGSGIKPTSA EATDSVSQPP LAADLNLEIA SRSQLSNGFW TNETGFGGGA NAATTGGFDL 180 NYGIGFLGFD FNGSSEMGFE NNQMPKVGLG LSQVGVLNPQ IYQQMGQEQT KVLLHHHHHH 240 HHPHEAQQEN ADKNGS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp7g00880

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006405404.1	1e-116	transcription factor TCP6
Swissprot	Q9FLM6	1e-88	TCP6_ARATH; Transcription factor TCP6
TrEMBL	V4LWE9	1e-115	V4LWE9_EUTSA; Uncharacterized protein
STRING	XP_006405404.1	1e-116	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15743	14	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41030.1	3e-73	TCP family protein

Publications ? help Back to Top
Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]