PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g32860
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 307aa    MW: 34796.3 Da    PI: 5.454
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g32860genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-12148191654
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 ++ErrRR+r+N++++ Lr+++Pk      +K++  +iL  A++Y+k+L
  Tp6g32860 148 LMAERRRRKRLNDRLSMLRSIVPKI-----TKMDRTSILGDAIDYMKEL 191
                589*********************7.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.663142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-15145203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-10148191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-15149201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.33E-5149191No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEMEWTQLRK QEINNVDGNN GEFMAMEQFV QSGQNLDYLC FNNTLQVQED DNIDHTFSSL  60
MDLISQPPPL LHQPPQPSSS FDYPFLETLQ DVIESSYSPP LMLPASQGDN NNNSSPLMEK  120
NKSIMSIGRT TNKRKSNKKL EGQPSKNLMA ERRRRKRLND RLSMLRSIVP KITKMDRTSI  180
LGDAIDYMKE LLDKINKLQE HGSNSHLKDN LTTNESMVRN SPKFQAEQRE GNTHIDICCS  240
MKPGLLLSTV STLEILGLEI QQCVISCFGD FSLQASCSEV AEQRDFVTSE DIKQALFKNA  300
SYGGRCS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132154KRKSNKKLEGQPSKNLMAERRRR
2150157ERRRRKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g32860
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024012283.11e-157LOW QUALITY PROTEIN: transcription factor bHLH61
SwissprotQ9LXA91e-143BH061_ARATH; Transcription factor bHLH61
TrEMBLV4LMG91e-147V4LMG9_EUTSA; Uncharacterized protein
STRINGXP_006399555.11e-148(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20432878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10570.11e-138bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]