PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g21780 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | B3 | ||||||||
Protein Properties | Length: 245aa MW: 27802.5 Da PI: 9.9109 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.4 | 1.2e-13 | 15 | 102 | 1 | 91 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 ffkv +++ l +p +f ++ ++k+ +k +tl++ g+ W++ l +k+ g yvl +GWk+ +k+ +L gD + F +dg++ f+ Tp6g21780 15 FFKVY--LPGKSRDDLEIPVSFN-SC-LPKPLPKNVTLRSIYGKIWKMAL--TKCCGDvekYVLVNGWKRIAKDEELAGGDLLEFDFDGSRYFN 102 66766..67788899*******7.67.5678999****************..555555556*************************99866663 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 9.81E-18 | 9 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-16 | 9 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.716 | 13 | 109 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.12E-12 | 13 | 106 | No hit | No description |
Pfam | PF02362 | 1.7E-11 | 15 | 103 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.2E-12 | 15 | 109 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.2E-4 | 120 | 189 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-6 | 120 | 189 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MKQGRNSADD CLPKFFKVYL PGKSRDDLEI PVSFNSCLPK PLPKNVTLRS IYGKIWKMAL 60 TKCCGDVEKY VLVNGWKRIA KDEELAGGDL LEFDFDGSRY FNFCIYEPLT TCKRLRRSSP 120 IPSKVIKDYG LKFAESITIV DPLVKKFGTV AKKIKIQLNG RVFIKGYGTI LRRNGVKSSD 180 KMICELKKAG CPSGRINLRD IMEEGESNND KYSAIDFGTN HHIGPSTVRF KLFQLSELFR 240 TCTFV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g21780 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006400878.1 | 3e-87 | B3 domain-containing protein At5g60130 | ||||
Swissprot | Q9LST3 | 1e-49 | Y5142_ARATH; B3 domain-containing protein At5g60142 | ||||
TrEMBL | V4N989 | 6e-86 | V4N989_EUTSA; Uncharacterized protein | ||||
STRING | XP_006400878.1 | 1e-86 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4947 | 18 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60142.1 | 5e-52 | B3 family protein |