PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp6g18520

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

HRT-like

Protein Properties

Length: 486aa MW: 54824.5 Da PI: 9.1052

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp6g18520	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	53.9	3.1e-17	280	310	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGvile+G C++ PvkgRKRC eHKG+Ri Tp6g18520 280 VCGVILENGGYCSQIPVKGRKRCLEHKGQRI 310 7*****************************7 PP
2	HRT-like	45.3	1.5e-14	339	369	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGvil + +C + P+ gRKRCe HKGmRi Tp6g18520 339 MCGVILPNMEPCIKRPISGRKRCEDHKGMRI 369 6*****************************7 PP
3	HRT-like	29.2	1.6e-09	408	434	2	28
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKG 28 C +++++G +C+r+ kg KRC++HK Tp6g18520 408 CEATTKNGLPCTRSSPKGSKRCWQHKE 434 99************************7 PP
4	HRT-like	40.9	3.4e-13	454	483	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGv+ + +C+r+PvkgRKRCeeHKGmRi Tp6g18520 454 MCGVKVCN-LICERSPVKGRKRCEEHKGMRI 483 59999998.9********************7 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence Send to blast
MDFGGGVSFA VVPTVYKRED YKRTKHDAVF SKWKVLIGSN DWEDFKNGKD GVGRYRVQNL 60 PRKSCPGLYE LGVAVIGHDQ ARKLDSDDVL AAYLGQAESV RSRLQRYGRS GAHLRNVNNN 120 LNDCETTESP DKKAVTAGLF EDVFMKVGSI VYRWAPMGSK REAEATEGML LSTFDYAWNK 180 GSNGERRQLD LLEKLGDPEF MSKRKSGITR VLFPFLRKQV GIKIKGQEQV LKEDRKLSCD 240 VDEEKKSNNF LTSIIKLSRS RPQPVSDRFD EIDGSQSDSV CGVILENGGY CSQIPVKGRK 300 RCLEHKGQRI CRVSPEKHSP PQPEILTGQD HNHEDSDVMC GVILPNMEPC IKRPISGRKR 360 CEDHKGMRIN AFLFLLNRTD REKTAKDEKY DPEPTDDINE EKASNRFCEA TTKNGLPCTR 420 SSPKGSKRCW QHKEKTSGDC LPVNVHPVAG KQVMCGVKVC NLICERSPVK GRKRCEEHKG 480 MRIIPS

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence Send to blast

MDFGGGVSFA VVPTVYKRED YKRTKHDAVF SKWKVLIGSN DWEDFKNGKD GVGRYRVQNL  60
PRKSCPGLYE LGVAVIGHDQ ARKLDSDDVL AAYLGQAESV RSRLQRYGRS GAHLRNVNNN  120
LNDCETTESP DKKAVTAGLF EDVFMKVGSI VYRWAPMGSK REAEATEGML LSTFDYAWNK  180
GSNGERRQLD LLEKLGDPEF MSKRKSGITR VLFPFLRKQV GIKIKGQEQV LKEDRKLSCD  240
VDEEKKSNNF LTSIIKLSRS RPQPVSDRFD EIDGSQSDSV CGVILENGGY CSQIPVKGRK  300
RCLEHKGQRI CRVSPEKHSP PQPEILTGQD HNHEDSDVMC GVILPNMEPC IKRPISGRKR  360
CEDHKGMRIN AFLFLLNRTD REKTAKDEKY DPEPTDDINE EKASNRFCEA TTKNGLPCTR  420
SSPKGSKRCW QHKEKTSGDC LPVNVHPVAG KQVMCGVKVC NLICERSPVK GRKRCEEHKG  480
MRIIPS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in the regulation of cell differentiation in meristems. Probably regulates the expression of various KNAT genes involved in the maintenance of the cells in an undifferentiated, merismastic state. Plays a role in the regulation of gibberellin 20 oxidase and the gibberellin-regulated protein GASA4. Localizes in the nucleus during the cellular differentiation state and may act via a single strand cutting domain (PubMed:17991462). Transcriptional regulator required for the induction of dormancy during late seed development. Interacts genetically with FUS3 and may be component of the same regulatory pathway during embryogenesis. Binds both linear and supercoiled DNA without sequence preference (PubMed:22226340). {ECO:0000269\|PubMed:17991462, ECO:0000269\|PubMed:22226340}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp6g18520

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002866167.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2
Swissprot	F4K933	0.0	ET2_ARATH; Protein EFFECTOR OF TRANSCRIPTION 2
TrEMBL	D7MM69	0.0	D7MM69_ARALL; Uncharacterized protein
STRING	scaffold_802235.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2954	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	0.0	effector of transcription2