PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g04600
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bZIP
Protein Properties Length: 331aa    MW: 36837.2 Da    PI: 6.6047
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g04600genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.21.1e-10206249548
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                kr +r   NR +A+rsR RK+++i eLe+ v +L++e + L  +
  Tp5g04600 206 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSVLSPR 249
                899********************************998777655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-13202266IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.588204256IPR004827Basic-leucine zipper domain
PfamPF001703.0E-9206250IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.49E-11206260No hitNo description
Gene3DG3DSA:1.20.5.1703.0E-13206257No hitNo description
CDDcd147031.10E-22207257No hitNo description
PROSITE patternPS000360209224IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MAQLPPKIPT MTTTTTPHWP DFSSQKLPSI AATAAATAAT AGQPNPSWMD EFLDFSATRR  60
GTHRRSISDS IAFLEAPSSG VGSHHFDRFD DEQFMSMFND DVHHNNHNHH HNSVNGNVGA  120
TRSSSNTSTP SDHNSLDDDD DNKEAPPSDH NNHMDTTADH NNNVAGNNYN ESDEVQSQCK  180
TEPQDGPSSA NQNSGGSSGN RIHDPKRVKR ILANRQSAQR SRVRKLQYIS ELERSVTSLQ  240
TEVSVLSPRV AFLDHQRLLL NVDNSAIKQR IAALAQDKIF KDAHQEALKR EIERLRQVYH  300
QQSLKKMENN VSDQSPADIK PSVEKEQLLN A
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator. {ECO:0000269|PubMed:17719007}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g04600
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4013000.0AF401300.1 Arabidopsis thaliana transcription factor bZIP61 (BZIP61) mRNA, complete cds.
GenBankAY0873560.0AY087356.1 Arabidopsis thaliana clone 34553 mRNA, complete sequence.
GenBankAY0930530.0AY093053.1 Arabidopsis thaliana pelota-like protein (At3g58120) mRNA, complete cds.
GenBankBT0087280.0BT008728.1 Arabidopsis thaliana At3g58120 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010427719.10.0PREDICTED: basic leucine zipper 61
SwissprotQ9M2K40.0BZP61_ARATH; Basic leucine zipper 61
TrEMBLA0A1J3ENC30.0A0A1J3ENC3_NOCCA; Basic leucine zipper 61
STRINGXP_010427719.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17532777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.11e-163bZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]