PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA9578

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

NAC

Protein Properties

Length: 353aa MW: 40056.9 Da PI: 8.716

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA9578	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.6	2e-56	17	143	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhPtdeel+++yL kkv ++++++ ++i +vd++k+ePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWka Tp57577_TGAC_v2_mRNA9578 17 LPPGFRFHPTDEELISHYLYKKVLDSNFSA-RAIGDVDLNKSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEQGYWKA 100 79************************99.89***********888999*************************** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 tgkdke+++ +++lvg+kktLvfykgrapkgek++Wvmheyrle Tp57577_TGAC_v2_mRNA9578 101 TGKDKEIFK-GKSLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 143 *****.999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-64	13	167	IPR003441	NAC domain
PROSITE profile	PS51005	59.783	17	167	IPR003441	NAC domain
Pfam	PF02365	8.6E-30	18	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MENVLLSCNK EDEKMDLPPG FRFHPTDEEL ISHYLYKKVL DSNFSARAIG DVDLNKSEPW 60 DLPWKAKMGE KEWYFFCVRD RKYPTGLRTN RATEQGYWKA TGKDKEIFKG KSLVGMKKTL 120 VFYKGRAPKG EKSNWVMHEY RLEGKFSVHN LPKSAKNEWV ICRVFQKSSA GKKTHISGIM 180 RLDSLGNELG RSVLPPLTDT SRSIGKLEQL NDSAYVPCFS NSIDVQRNQG GIFDSFNNSI 240 YGVSSNNQLD NFSRILSSNA GSLYSNNNNN NQSAVNLQFP GSVCGMQDQA ILRALYENNG 300 FKTERQVSHE TDLTTDMNGE RCSFDIGRRA YENNQNRPPP ASVDFDGTLW NY*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MENVLLSCNK EDEKMDLPPG FRFHPTDEEL ISHYLYKKVL DSNFSARAIG DVDLNKSEPW  60
DLPWKAKMGE KEWYFFCVRD RKYPTGLRTN RATEQGYWKA TGKDKEIFKG KSLVGMKKTL  120
VFYKGRAPKG EKSNWVMHEY RLEGKFSVHN LPKSAKNEWV ICRVFQKSSA GKKTHISGIM  180
RLDSLGNELG RSVLPPLTDT SRSIGKLEQL NDSAYVPCFS NSIDVQRNQG GIFDSFNNSI  240
YGVSSNNQLD NFSRILSSNA GSLYSNNNNN NQSAVNLQFP GSVCGMQDQA ILRALYENNG  300
FKTERQVSHE TDLTTDMNGE RCSFDIGRRA YENNQNRPPP ASVDFDGTLW NY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-54	14	173	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-54	14	173	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-54	14	173	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-54	14	173	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	8e-54	14	173	17	174	NAC domain-containing protein 19
3swm_B	8e-54	14	173	17	174	NAC domain-containing protein 19
3swm_C	8e-54	14	173	17	174	NAC domain-containing protein 19
3swm_D	8e-54	14	173	17	174	NAC domain-containing protein 19
3swp_A	8e-54	14	173	17	174	NAC domain-containing protein 19
3swp_B	8e-54	14	173	17	174	NAC domain-containing protein 19
3swp_C	8e-54	14	173	17	174	NAC domain-containing protein 19
3swp_D	8e-54	14	173	17	174	NAC domain-containing protein 19
4dul_A	6e-54	14	173	14	171	NAC domain-containing protein 19
4dul_B	6e-54	14	173	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA9578

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT051637	0.0	BT051637.1 Medicago truncatula clone MTYF5_F6_F7_F81G-M-19 unknown mRNA.
GenBank	BT147860	0.0	BT147860.1 Medicago truncatula clone JCVI-FLMt-11F23 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013457910.1	0.0	NAC domain-containing protein 100
Swissprot	Q9FLJ2	1e-138	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2K3LFM4	0.0	A0A2K3LFM4_TRIPR; NAC domain-containing protein (Fragment)
STRING	XP_004508725.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-136	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA9578

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]