PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA6955
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 330aa    MW: 37867.1 Da    PI: 6.419
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA6955genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.6e-171461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              rg W++eEde+l+++++ +G g+W+ ++++ g+ R++k+c++rw +yl
  Tp57577_TGAC_v2_mRNA6955 14 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61
                              788*******************************************97 PP
2Myb_DNA-binding482.9e-1567118147
                               TSSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwqky 47 
                               rgr+T+eE++l++ ++   G+       +W+ Ia++++ gRt++++k++w+++
  Tp57577_TGAC_v2_mRNA6955  67 RGRFTPEEEKLIISLHGVVGNSnyfhtcRWAHIASHLP-GRTDNEIKNYWNSW 118
                               89******************99****************.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-25664IPR009057Homeodomain-like
PROSITE profilePS5129423.67965IPR017930Myb domain
SuperFamilySSF466895.62E-2711115IPR009057Homeodomain-like
SMARTSM007171.9E-121363IPR001005SANT/Myb domain
PfamPF002492.5E-151461IPR001005SANT/Myb domain
CDDcd001675.36E-111761No hitNo description
Gene3DG3DSA:1.10.10.609.2E-2365123IPR009057Homeodomain-like
PROSITE profilePS5129416.12566123IPR017930Myb domain
SMARTSM007174.6E-1266121IPR001005SANT/Myb domain
PfamPF002496.1E-1467118IPR001005SANT/Myb domain
CDDcd001674.80E-1069118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY  60
LRPDIRRGRF TPEEEKLIIS LHGVVGNSNY FHTCRWAHIA SHLPGRTDNE IKNYWNSWIK  120
KKIRKSSSSS SINSSINAPS VDHHHHSQFN YNFNQLDNYF TNHENVTTST TKETLFSSTC  180
PSFMFDTSSL HETTSTIDTN VIIRPEILFH DTMSLSSETW NLNLNHHQVQ ALPPHPASTT  240
TFTTNIHDYN LPPLIENNVE NMMQSCNMDH EEGGEMLELN EWVENEQQQC PSFIFSWESD  300
QEQVLVPNSL PHMGTTNSSS LSPFPSSLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-23141237108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA6955
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003611063.21e-157transcription factor MYB21
TrEMBLG7KC051e-156G7KC05_MEDTR; Myb transcription factor
STRINGXP_004512190.11e-148(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41123358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.15e-84myb domain protein 103