PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA6362
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GATA
Protein Properties Length: 750aa    MW: 84238.2 Da    PI: 8.4265
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA6362genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.41.9e-18232265134
                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                               C +C +t+Tp+WR+gp g++tLCnaCG++yr+ +
  Tp57577_TGAC_v2_mRNA6362 232 CMHCEVTETPQWREGPKGPRTLCNACGVRYRSGR 265
                               99*****************************987 PP
2GATA565.3e-18516549134
                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                               C +C +t+Tp+WR+gp g++tLCnaCG++yr+ +
  Tp57577_TGAC_v2_mRNA6362 516 CMHCEVTETPQWREGPKGSRTLCNACGVRYRSGR 549
                               99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.648226262IPR000679Zinc finger, GATA-type
SMARTSM004011.2E-15226276IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-14228289No hitNo description
Gene3DG3DSA:3.30.50.106.3E-14230263IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.79E-15231278No hitNo description
PROSITE patternPS003440232257IPR000679Zinc finger, GATA-type
PfamPF003202.3E-16232265IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.741510546IPR000679Zinc finger, GATA-type
SMARTSM004011.4E-14510560IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-14512573No hitNo description
Gene3DG3DSA:3.30.50.106.4E-14514547IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.28E-14515562No hitNo description
PROSITE patternPS003440516541IPR000679Zinc finger, GATA-type
PfamPF003206.0E-16516549IPR000679Zinc finger, GATA-type
SuperFamilySSF520583.2E-10585638IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.4E-10586637IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:1.10.510.103.5E-8693731No hitNo description
SuperFamilySSF561121.37E-9693733IPR011009Protein kinase-like domain
PROSITE patternPS001080698710IPR008271Serine/threonine-protein kinase, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MKNNWFFDSN CNGVSDEILE DVVDFFDFPD EDVETDDGEH DWNDKFKHLE EPSLGIFSVS  60
STELHGKTKP VNNFAAAELS HIDRRNIVNP SLKGQQALLR KAARPAYTKT LPIQMVSFNG  120
TNLRKCQTYS PVSVFESSSY SSVENFNFEL PVIPAKRPRS KRQRLSSFDK LFTIPFISTP  180
PAFQKYQLAK QCAGKSSSKV QRKLGKKDIS SFSDGIEMKR SALQDSATPT KCMHCEVTET  240
PQWREGPKGP RTLCNACGVR YRSGRLFPEY RPAASPTFEA SLHSNSHKKV LEIRNKDNAN  300
MKSNWFFDNN FNGVSDEILE DVVEFFDFPH EDVETDAVEH DLNDQFKHLE EPSLGIFSVP  360
SSELYGETQN EKPNSINNFA AAELSHIDRR NNVNASLKDQ QALAATKTMV IQMVSFNGTN  420
LRKCQTYSPV SVFESSSYSS VENFNFELPV IPAKRPRNKL QRLSSAFQKH QLEKQCAGKS  480
SSKVQRKPSK KDISSLSDGI EMKRSALQDS ATPTKCMHCE VTETPQWREG PKGSRTLCNA  540
CGVRYRSGRL FPEYRPAASP TFEASLHSNS HKKVLEIRNK CYDVLLHGNF ITGDIPKEFG  600
NLTSLVSLDL RNNRLIGEIT FSLGNLKKLK FFFGGNNLNC AVNYSQPCEP NNAEQGSSDK  660
PTVLIIGVSI AFVTVFVIGS LLLYWWKGNK REHCDPKIIH GDVKAANVFL DDSLKAVVGD  720
FGLAKLVEIG KVSRLWFKSS CHMSLSNYY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA6362
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024637963.11e-146GATA transcription factor 11
RefseqXP_024637964.11e-146GATA transcription factor 11
TrEMBLA0A2K3KZ290.0A0A2K3KZ29_TRIPR; GATA transcription factor 11-like protein (Fragment)
STRINGXP_004506013.11e-130(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57582849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.26e-37GATA transcription factor 11