PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA6066
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GATA
Protein Properties Length: 275aa    MW: 30929.8 Da    PI: 7.1981
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA6066genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.48.2e-18202236135
                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                               C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  Tp57577_TGAC_v2_mRNA6066 202 CTHCLSQKTPQWRAGPLGPKTLCNACGVRYKSGRL 236
                               *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.517196232IPR000679Zinc finger, GATA-type
SMARTSM004013.0E-15196250IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.19E-14199260No hitNo description
Gene3DG3DSA:3.30.50.101.1E-13200234IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.86E-12201248No hitNo description
PROSITE patternPS003440202227IPR000679Zinc finger, GATA-type
PfamPF003201.4E-15202236IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MDVCQNVSVS DECKQEKILN PSNSLDDLFS AQNMEVNVEM EWLSVFVEDC FSSPQSCVLL  60
PSNVQNTTNT IITSKPSNTT KKPNQQEQNE SPMQNFTVPG KARSKRKRLS APRRPKNPLS  120
ILSNTLNPQN ESLCSDPPLL KQTYWLADSE LIVPKDVTKD DCEVIEQEIV KKEKFDFEGF  180
EENNNDVNNN NNGSNSIPSR RCTHCLSQKT PQWRAGPLGP KTLCNACGVR YKSGRLLPEY  240
RPAKSPTFVS YLHSNSHKKV MEMRMNVESS NPSE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA6066
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003624611.11e-151GATA transcription factor 4
TrEMBLA0A2Z6PFI51e-165A0A2Z6PFI5_TRISU; Uncharacterized protein
STRINGAES808291e-150(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84872444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.12e-40GATA transcription factor 9