PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA5167
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 315aa    MW: 36285.3 Da    PI: 8.9693
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA5167genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.92e-121257146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                              +g+W+ eEde l++ v+++G+++W+ I ++  + Rt+k+c++rw +
  Tp57577_TGAC_v2_mRNA5167 12 KGPWSSEEDEVLLKHVNKYGPRDWSCIRSKGLLPRTGKSCRLRWVN 57
                              79*************************8876677**********87 PP
2Myb_DNA-binding39.31.5e-1268108345
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                               ++++eE+   +++  q+G++ W++Ia ++  gRt++++k++w 
  Tp57577_TGAC_v2_mRNA5167  68 KFSAEEERVVIELQGQFGNR-WAKIATYLE-GRTDNDVKNFWS 108
                               79******************.*********.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.906163IPR017930Myb domain
SuperFamilySSF466896.24E-2810107IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-191060IPR009057Homeodomain-like
SMARTSM007174.6E-111161IPR001005SANT/Myb domain
CDDcd001672.08E-101459No hitNo description
PfamPF139212.8E-111565No hitNo description
Gene3DG3DSA:1.10.10.603.6E-1761113IPR009057Homeodomain-like
PROSITE profilePS5129416.30564115IPR017930Myb domain
SMARTSM007172.0E-1165113IPR001005SANT/Myb domain
CDDcd001671.08E-868107No hitNo description
PfamPF002491.2E-1068108IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEREFERGYI KKGPWSSEED EVLLKHVNKY GPRDWSCIRS KGLLPRTGKS CRLRWVNKLR  60
PDLKTGCKFS AEEERVVIEL QGQFGNRWAK IATYLEGRTD NDVKNFWSSR KKKMKRTYPR  120
TPSPPSKKHK NKGKTIPNQL KVEKVKWTHF LLNCVSRFSA GLVPESDSNQ LDENLTHPIS  180
YMGNKQVFKM INLPDLTKPN YQDLKNELNA VEVEEATPLH TVPSFESSSG YNFPLPPESQ  240
MDFPLFPECQ DIVQEPFYPN FMDMFEQKKC SESVWSQKIG TKLPSFGLEG TSQSASSSCS  300
FKDIPTEIFE YFAQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-271010925122MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA5167
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013455199.10.0transcription factor DUO1
TrEMBLA0A2K3NPU20.0A0A2K3NPU2_TRIPR; Transcription factor MYB 29-like protein
STRINGXP_004506466.11e-167(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36933164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.17e-61MYB family protein