PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA5009
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 315aa    MW: 35780.7 Da    PI: 6.0461
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA5009genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12.1e-182471148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              rg+WT eEd ll+++++++G g+W+  a+  g++Rt+k+c++rw++yl
  Tp57577_TGAC_v2_mRNA5009 24 RGPWTLEEDSLLIQYIARHGEGRWNMLAKSAGLKRTGKSCRLRWLNYL 71
                              89********************************************97 PP
2Myb_DNA-binding51.32.7e-1677120146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               rg+ +++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Tp57577_TGAC_v2_mRNA5009  77 RGNLSPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 120
                               7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.1371971IPR017930Myb domain
SuperFamilySSF466895.62E-3122118IPR009057Homeodomain-like
SMARTSM007179.5E-162373IPR001005SANT/Myb domain
PfamPF002497.9E-172471IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-232578IPR009057Homeodomain-like
CDDcd001678.49E-132671No hitNo description
PROSITE patternPS0017503948IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129425.30872126IPR017930Myb domain
SMARTSM007175.5E-1576124IPR001005SANT/Myb domain
PfamPF002492.3E-1577120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-2379125IPR009057Homeodomain-like
CDDcd001678.40E-1281120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MSIAMSTTTK REFGNSDEEN ELRRGPWTLE EDSLLIQYIA RHGEGRWNML AKSAGLKRTG  60
KSCRLRWLNY LKPDIKRGNL SPQEQLLILE LHSKWGNRWS KIAQHLPGRT DNEIKNYWRT  120
RVQKQARQLN IESGSKRFLD AVKCFWMPRL LQKMEQNTSP ISDHSSITNM NNFGNSFEAS  180
TSTNNSISTS FNVPSISPSS QNSFIDASSA NHLSTMSSTN NNPSLDFLQF SQPLEISENS  240
KSAPNVLDNN VYNCPIQENY SIDDTNNYGF EGLYFDPPSS METCDFSQFD FQTSGSGWML  300
DNMANSTLWN MDAM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-26211261105MYB PROTO-ONCOGENE PROTEIN
1h8a_C7e-262112624128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA5009
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1540894e-98AC154089.20 Medicago truncatula clone mth2-91j8, complete sequence.
GenBankAC1651354e-98AC165135.29 Medicago truncatula clone mth2-20f2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003592641.20.0transcription factor MYB62
SwissprotQ9C9G72e-86MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A2K3M0B90.0A0A2K3M0B9_TRIPR; Transcription factor MYB 21-like protein
STRINGAES628920.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.12e-86myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]