PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA39767 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MYB | ||||||||
Protein Properties | Length: 182aa MW: 20698.4 Da PI: 9.0866 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55 | 1.9e-17 | 22 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde+l+ +++ +G g+W++ ++ g+ R++k+c++rw +yl Tp57577_TGAC_v2_mRNA39767 22 KGAWSKEEDERLIAYITAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 69 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 60.1 | 4.9e-19 | 75 | 120 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++Ed+l+++++++lG++ W++Ia +++ gRt++++k++w+++l Tp57577_TGAC_v2_mRNA39767 75 RGNFTQQEDQLIIKLHTLLGNK-WSLIAGRLP-GRTDNEIKNYWNTHL 120 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.4E-24 | 13 | 72 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.677 | 17 | 69 | IPR017930 | Myb domain |
SMART | SM00717 | 9.0E-13 | 21 | 71 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.07E-29 | 21 | 116 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-14 | 22 | 69 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.03E-9 | 24 | 69 | No hit | No description |
PROSITE profile | PS51294 | 28.161 | 70 | 124 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-28 | 73 | 124 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.0E-17 | 74 | 122 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-16 | 75 | 120 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.85E-11 | 77 | 120 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MEEKRSIDMG RSPCCEKGHT NKGAWSKEED ERLIAYITAH GEGCWRSLPK AAGLLRCGKS 60 CRLRWINYLR PDLKRGNFTQ QEDQLIIKLH TLLGNKWSLI AGRLPGRTDN EIKNYWNTHL 120 RKKLLSRGID PATQMPLNQT SQQEERCPDL NLELTISPPH DHPHQQQQQP FSSGTSSTVT 180 S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 8e-29 | 21 | 124 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA39767 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU024876 | 2e-64 | CU024876.6 M.truncatula DNA sequence from clone MTH2-144H1 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027354269.1 | 8e-95 | myb-related protein 308-like | ||||
Refseq | XP_028227237.1 | 4e-95 | myb-related protein 308-like | ||||
Swissprot | P81393 | 5e-90 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A0A2K3L9I7 | 1e-114 | A0A2K3L9I7_TRIPR; MYB-related protein 308-like protein | ||||
STRING | Gorai.008G035700.1 | 7e-94 | (Gossypium raimondii) | ||||
STRING | GLYMA04G00550.1 | 5e-94 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF264 | 34 | 221 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 1e-88 | myb domain protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA39767 |
Publications ? help Back to Top | |||
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