PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA39592 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | C2H2 | ||||||||
Protein Properties | Length: 254aa MW: 28849.7 Da PI: 8.3813 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.1 | 0.0012 | 93 | 115 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C ++++++ +L H + H Tp57577_TGAC_v2_mRNA39592 93 SCSVCFRVYPTSRLLSIHVSEaH 115 6*****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.73 | 65 | 90 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 67 | 90 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 11 | 92 | 115 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 94 | 115 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.2 | 130 | 155 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 132 | 155 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MDVENQNPDS EFPFWKPIPR RFQPDSPFFA IGNLERELLV KQVALELTEE KEQLEDLIQE 60 DVREVFCPIV GCGARLASME DFENHYNARH TASCSVCFRV YPTSRLLSIH VSEAHDSFFQ 120 AKVARGYDMY ECLVEGCGLK FKSYKSRHQH LVDKHKFPTS FEFFKKALPS KKHRMKSQRK 180 KPSHSHKEDT SGMMEVENAA IDDLVSAVSK LNTSDSTPSS ISFGRRNPKG MTFVPRAVQH 240 GKGSNSDSSV TKR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA39592 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004513314.1 | 1e-162 | zinc finger protein 511 | ||||
TrEMBL | A0A2K3N2X7 | 0.0 | A0A2K3N2X7_TRIPR; Zinc finger protein 511-like protein | ||||
STRING | XP_004513314.1 | 1e-161 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9718 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14140.1 | 1e-114 | zinc ion binding;nucleic acid binding;zinc ion binding |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA39592 |