PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA37175
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 118aa    MW: 13223.4 Da    PI: 10.823
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA37175genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.23e-212877255
                        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                               +++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAaka++aa+++++g
  Tp57577_TGAC_v2_mRNA37175 28 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAAKAYDAAARQFRG 77
                               58*******.**********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-232885IPR016177DNA-binding domain
PROSITE profilePS5103223.672885IPR001471AP2/ERF domain
SMARTSM003802.2E-382891IPR001471AP2/ERF domain
PfamPF008479.2E-152877IPR001471AP2/ERF domain
CDDcd000181.64E-192885No hitNo description
Gene3DG3DSA:3.30.730.105.0E-332885IPR001471AP2/ERF domain
PRINTSPR003673.0E-112940IPR001471AP2/ERF domain
PRINTSPR003673.0E-115167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MVMKTKNVNL KIKKPFNNNN NVTTTEIHFR GVRKRPWGRY AAEIRDPGKK SRVWLGTFDT  60
AEEAAKAYDA AARQFRGPKA KTNFPPPSDV VKEDSPSQSS TVESSXXXXX XXXXXHT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-222885260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-222885563ATERF1
3gcc_A2e-222885563ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA37175
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003607496.13e-57ethylene-responsive transcription factor 9
SwissprotQ9LW499e-38ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLA0A2K3M0771e-69A0A2K3M077_TRIPR; Ethylene-responsive transcription factor 4-like protein
STRINGAES896931e-56(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.16e-29erf domain protein 9