PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA35829
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 883aa    MW: 98962 Da    PI: 8.5501
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA35829genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.3e-08149171326
                                S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                                t++Cr+fa  G C++G+ C+F H 
  Tp57577_TGAC_v2_mRNA35829 149 TRPCRDFAV-GKCRRGSLCNFLHH 171
                                89*******.*************6 PP
2zf-CCCH20.49e-07253274426
                                ---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                e C +fa+ G C+ G +CkF H+
  Tp57577_TGAC_v2_mRNA35829 253 EVCTNFAK-GRCRMGTSCKFVHD 274
                                78******.*************6 PP
3zf-CCCH20.11.1e-06318338526
                                --SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                +C+ffa  G C+ G  CkF+H+
  Tp57577_TGAC_v2_mRNA35829 318 PCKFFAN-GNCRNGKFCKFSHD 338
                                8**8888.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.788147173IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011148172IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-5149171IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-5149173IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.727249276IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-5249274IPR000571Zinc finger, CCCH-type
SMARTSM003560.0013250275IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-5253275IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.873313340IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-5313339IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-6315338IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-4318338IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-4318343IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 883 aa     Download sequence    Send to blast
MSETGRKRSS KWDLSDEHRQ MRSGWSSADV AGNNSSKWAY SEGNDKLRPV MGYSSKESFS  60
GGRGSYEDDA MNEDHRILDT RREWNTDGSY SKKRSPWQEE WEPKRRSQSP INGWNRSSRS  120
RSQSRSPPRG FRRDSGVDDR KRMRVVGSTR PCRDFAVGKC RRGSLCNFLH HDNQNRENSW  180
EGKHREDRAP RYSATHERGD HSLKSGRSMH DNDSDGYGKV SMDEFTRERE DRAPRYPPHE  240
DGDRSLKRGR SSEVCTNFAK GRCRMGTSCK FVHDNDSDGY GKVCMDEFTR DREIDRRHRD  300
NSFEQGGRHV PNRTSDTPCK FFANGNCRNG KFCKFSHDKQ ACRSPNRRLR DDRWARNPGR  360
DHQMLDRQKW SDSMSPNRRP RDDRWGSDGD VADPDRVGDS PKRNNKVSVS DTTKLIENKS  420
GNVDATDPGF TTLSVTDGYG HELDKGELHG KPPISSDTKE ADCWIEENTG GNMHGSHSIV  480
TKDIWPGDAE MSPDWNYKTG PSSHMEEPGQ NKHGIRQGGT YLAISEPDRV QLAPGQSINQ  540
TAQNVNPLHT SSCHEVEQSQ VDVPILPSSG GIVDATHRQE VSTEKKYTVE PNITDSGLSQ  600
VRSINPPTQN AVSNEQLAQL TTSLAHILGA GQQLPQLYAA LNSHDLKDSP SQAKTQVPAM  660
PVSITCINPV PAVGFPKQYG PVNDSIEQKN ADASGVPPAI PPSKNIAEVE ILSQLSNPGK  720
QNCGDSIKGA SSELVKSDNL IHLQPGQNTV VNKDNNEEVA KERKNSEDGH KSTKENGPQI  780
TDQNARPDDA KQTKEMKGIR TFKFALAEFV KELLKPAWKE GQITNKEDYK TIVKKVLDKV  840
TATMQAANIP QTQEKIDQYL SFSKPKLNKL VQAYVEKVQK PQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA35829
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0095680.0CT009568.8 M.truncatula DNA sequence from clone MTH2-95K22 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004502920.10.0zinc finger CCCH domain-containing protein 38-like
RefseqXP_012571935.10.0zinc finger CCCH domain-containing protein 38-like
RefseqXP_012571936.10.0zinc finger CCCH domain-containing protein 38-like
RefseqXP_027190231.10.0zinc finger CCCH domain-containing protein 38-like
TrEMBLA0A2K3NMG10.0A0A2K3NMG1_TRIPR; Zinc finger CCCH domain-containing protein 38-like
STRINGXP_004502920.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40993252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-16C3H family protein