PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA3556 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MYB | ||||||||
Protein Properties | Length: 241aa MW: 27380.4 Da PI: 9.4485 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.8 | 1.1e-17 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+d+++ +G g+W +I++ g++R++k+c++rw++yl Tp57577_TGAC_v2_mRNA3556 13 KGAWSKQEDQKLIDYIQVHGEGCWGSIPKAAGLHRCGKSCRLRWLNYL 60 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 44.1 | 4.9e-14 | 67 | 127 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT................-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg................tWktIartmgkgRtlkqcksrwqky 47 g + ++E++l+++++++lG++ +W++Ia +++ gRt++++k++w+++ Tp57577_TGAC_v2_mRNA3556 67 GIFAQDEEDLIIKLHALLGNRyptlhyklvhvtniliRWALIAGRLP-GRTDNEVKNYWNSH 127 66779******************************************.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.4E-24 | 4 | 62 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.775 | 8 | 64 | IPR017930 | Myb domain |
SMART | SM00717 | 5.7E-15 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-16 | 13 | 60 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.59E-24 | 13 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.19E-11 | 15 | 60 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-21 | 63 | 133 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.2E-10 | 65 | 130 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 12.514 | 65 | 132 | IPR017930 | Myb domain |
Pfam | PF00249 | 7.1E-12 | 69 | 127 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.09E-7 | 71 | 128 | No hit | No description |
SuperFamily | SSF46689 | 8.59E-24 | 100 | 129 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MRTPCCDKEN INKGAWSKQE DQKLIDYIQV HGEGCWGSIP KAAGLHRCGK SCRLRWLNYL 60 RPDIKRGIFA QDEEDLIIKL HALLGNRYPT LHYKLVHVTN ILIRWALIAG RLPGRTDNEV 120 KNYWNSHIRR KLIKMGIDPN NHKLHKGFPS PHVFAAGTSS SSCDKSINKL EINNNNNQIS 180 FIKSKSCDDE YINNSVSLTK KETSSLNLDL TIALPSPNKF VIPNNCESRK TRDMDIDLNC 240 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 7e-26 | 11 | 132 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA3556 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT699109 | 1e-108 | KT699109.1 Trifolium repens MYB134 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004490862.1 | 1e-116 | transcription factor MYB3-like | ||||
Swissprot | P81393 | 2e-67 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A0A110AH76 | 1e-123 | A0A110AH76_TRIRP; MYB134 | ||||
STRING | XP_004490862.1 | 1e-115 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF264 | 34 | 221 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 6e-68 | myb domain protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA3556 |
Publications ? help Back to Top | |||
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