PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA34859 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | C2H2 | ||||||||
Protein Properties | Length: 246aa MW: 26121.2 Da PI: 8.4082 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.0007 | 95 | 117 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k Fs+ L H +H Tp57577_TGAC_v2_mRNA34859 95 HKCSVCNKAFSSYQALGGHKASH 117 79**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.019 | 95 | 117 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.577 | 95 | 117 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.6E-13 | 95 | 119 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.05E-8 | 95 | 117 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 97 | 117 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.05E-8 | 147 | 174 | No hit | No description |
SMART | SM00355 | 0.19 | 152 | 174 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.411 | 152 | 174 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.4E-13 | 152 | 176 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 154 | 174 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006979 | Biological Process | response to oxidative stress | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010117 | Biological Process | photoprotection | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0015979 | Biological Process | photosynthesis | ||||
GO:0035264 | Biological Process | multicellular organism growth | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MAMEALNSPT TATPFTPFEE PNHGYIDAAP WTKGKRSKRS RMDQSSCTEE EYLALCLIML 60 ARSGNNNNNN KIITLPTAVK PALSDTESAP AKLSHKCSVC NKAFSSYQAL GGHKASHRKS 120 AVMSTGEDHQ TTTTSSAVTT SSAASNGKIK SHECSICHKS FPTGQALGGH KRCHYEGGAG 180 AGAGGGNSTV TASEVGSSHS QHRDFDLNLP AFPDFSKKFF VDDEVSSPHP AAKKPCLFKI 240 EIPQY* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00162 | DAP | Transfer from AT1G27730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA34859 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU443959 | 1e-177 | GU443959.1 Trifolium repens clone BAC 11l07 cyclin d, calcium ATPase, E3 ubiquitin ligase, galactose oxidase, adeninephosphoribosyl transferase, kruppel-like zinc finger protein, and cysteine protease genes, complete cds; and unknown genes. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013461770.1 | 1e-122 | zinc finger protein ZAT10 | ||||
TrEMBL | A0A2K3L1R5 | 1e-153 | A0A2K3L1R5_TRIPR; Zinc finger protein ZAT10-like | ||||
STRING | XP_004501530.1 | 1e-113 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1327 | 32 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27730.1 | 5e-52 | salt tolerance zinc finger |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA34859 |