PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA3339

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

bZIP

Protein Properties

Length: 202aa MW: 23209.7 Da PI: 6.0085

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA3339	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	47.1	5.2e-15	86	136	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 ++ rr+++NRe+ArrsR RK+++++eL v L +eN++L ++l++ +++ Tp57577_TGAC_v2_mRNA3339 86 RKHRRMISNRESARRSRMRKQKQLDELWSQVVWLRNENHQLLDKLNNFSET 136 678******************************************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.1E-13	82	146	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.404	84	147	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.1E-13	86	138	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.5E-11	86	158	No hit	No description
SuperFamily	SSF57959	1.76E-12	86	135	No hit	No description
CDD	cd14702	4.27E-18	87	138	No hit	No description
PROSITE pattern	PS00036	0	89	104	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MQTTEINTGL NYLLPNSIPS YPSCNFNMIQ NTLPNPQLQK YSNQFYGFNQ NPLQILQDFS 60 PQSSCLSSNS TSDEADEQNK GLINERKHRR MISNRESARR SRMRKQKQLD ELWSQVVWLR 120 NENHQLLDKL NNFSETHDRV VQENFQLKEE ASELRQMVCD MQLHSSCLPL SPFQDVASIT 180 SPHVKSDSSN QSNTNSDDLL G*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	98	105	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA3339

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013447699.1	1e-103	basic leucine zipper 43
Swissprot	Q9FMC2	6e-42	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	A0A072TWB0	1e-102	A0A072TWB0_MEDTR; BZIP transcription factor
STRING	GLYMA08G28220.1	2e-80	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1604	33	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30530.1	3e-51	basic leucine-zipper 42

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA3339

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]