PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA32397 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MYB_related | ||||||||
Protein Properties | Length: 273aa MW: 31368.3 Da PI: 9.728 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.1 | 2.3e-19 | 41 | 85 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r ++T+eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ + Tp57577_TGAC_v2_mRNA32397 41 RRPFTEEEEERLLAAHRIHGNK-WALIARLFP-GRTDNAVKNHWHVV 85 679*******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-9 | 24 | 48 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.41E-22 | 24 | 91 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 28.769 | 36 | 90 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-16 | 40 | 88 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-16 | 41 | 84 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-18 | 49 | 84 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.90E-8 | 52 | 86 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
LDNQYFSSCI YKKINIIFFY LFEGKSCRLR WFNQLDPRIN RRPFTEEEEE RLLAAHRIHG 60 NKWALIARLF PGRTDNAVKN HWHVVMARKQ REQSKLCGKR SFQDLYNNSS SSSILNFPYK 120 TRIGYENGKF YQFQNNLDTS SSSSLASWNF ASVLTKNTTT ATLFPDNSLA EKLSDCSKSS 180 DRSFLYKFCQ NPTFSSSLPN YKRIVPNAFG FFNPSDDGTI RKDLMSSLRD NSSTLIPNLK 240 ASKEKEQGHE VEIEKHKEVP FIDFLGVGVS SS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-20 | 24 | 89 | 42 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA32397 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013461367.1 | 1e-129 | transcription factor MYB54 | ||||
TrEMBL | A0A2K3L8L5 | 0.0 | A0A2K3L8L5_TRIPR; R2R3-MYB transcription factor (Fragment) | ||||
STRING | XP_004502570.1 | 3e-93 | (Cicer arietinum) | ||||
STRING | XP_007137516.1 | 3e-93 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF230 | 34 | 243 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 4e-39 | myb domain protein 52 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA32397 |