PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA32315 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | C2H2 | ||||||||
Protein Properties | Length: 185aa MW: 20929.5 Da PI: 6.4286 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14 | 0.00015 | 19 | 41 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H++ H Tp57577_TGAC_v2_mRNA32315 19 YECTFCKRGFTNAQALGGHMNIH 41 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.02E-6 | 17 | 45 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.9E-4 | 18 | 45 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.489 | 19 | 46 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0097 | 19 | 41 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 21 | 41 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MNSSEEGGGD DNQGKKCSYE CTFCKRGFTN AQALGGHMNI HRKDRSKASK QSNYSSSSQV 60 SNKFFTNDEG VAFPYANSEQ HMSQNFDHGM YFQHQYFPTP PPNNYLVGNN YQPSNVHGFG 120 YEYSRSSSNW SNLHLNQELQ GPNLSLQIGS SQHYVDNTHH QRIKRGNDEE ENEVDLELRL 180 GHDP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA32315 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC145202 | 1e-44 | AC145202.24 Medicago truncatula clone mth2-15e9, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003590803.1 | 4e-75 | probable transcriptional regulator RABBIT EARS | ||||
TrEMBL | A0A2K3LE10 | 1e-135 | A0A2K3LE10_TRIPR; Transcriptional regulator TAC1-like protein | ||||
STRING | AES61054 | 2e-74 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1686 | 30 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43540.1 | 1e-14 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA32315 |