PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA30042

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Dof

Protein Properties

Length: 292aa MW: 32619.2 Da PI: 8.4588

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA30042	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	111.1	5.2e-35	41	99	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++ ++cprCdstntkfCyynny+ sqPr+fC+aC+r+WtkGG+lrnvPvGg rknk++ Tp57577_TGAC_v2_mRNA30042 41 QSEVVNCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGG-VRKNKRV 99 56889*********************************************97.5666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-18	41	87	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.1E-31	43	97	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	26.748	45	99	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	47	83	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MGLSSKQVSS RSVDWNQTLL QDQNLELPKT HPMKKNQQIQ QSEVVNCPRC DSTNTKFCYY 60 NNYNKSQPRH FCRACKRHWT KGGTLRNVPV GGVRKNKRVK KSTSPISIST STKTTISTTT 120 TSITTPTTSN MKNQTSEQKQ NQKNISSSIY DQSVIHPPSF LLPQNLMSIK DQSEGNNNEE 180 FGIGNGMFLS SSMSFTQNQS LIFPFSNSSS LRSSNGYNYG EEFKIMEEST VNNSVMPLPS 240 TSGSGTITQP WEEIPATSTG MDMSNYWSWE DIDSLVSTDL NVPWDDSDIK P*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA30042

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF221751	9e-34	EF221751.1 Glycine max Dof6 transcription factor (Dof6) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003593557.1	1e-149	dof zinc finger protein DOF1.4
TrEMBL	A0A2K3PMI1	0.0	A0A2K3PMI1_TRIPR; Dof zinc finger protein
STRING	AES63808	1e-148	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5107	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	1e-23	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA30042