PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA28971 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | ARR-B | ||||||||
Protein Properties | Length: 360aa MW: 40895.7 Da PI: 6.1881 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 24.6 | 5.6e-08 | 213 | 233 | 1 | 21 |
G2-like 1 kprlrWtpeLHerFveaveqL 21 k+r+ WtpeLH++Fv+av +L Tp57577_TGAC_v2_mRNA28971 213 KTRITWTPELHKKFVRAVMEL 233 68****************999 PP | |||||||
2 | Response_reg | 55.4 | 3.5e-19 | 20 | 127 | 1 | 108 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahge 82 vl +d + ++++++++++ + +y +v++++++++al+ll ek+ +Dl+l+ +mp+m+ +e+l++ +++ ++p+i++ a ++ Tp57577_TGAC_v2_mRNA28971 20 VLMIDHDINLLNAFEKICFQFHY-SVKTCSKASDALNLLMEKKnsFDLVLIEAKMPDMNSYEFLQHVTQHI-NIPVIMMCADNT 101 7889999999*************.***************777777************************99.************ PP HHHHHHHHHTTESEEEESS--HHHHH CS Response_reg 83 eedalealkaGakdflsKpfdpeelv 108 + +++a++ Ga d+ Kp ++ + Tp57577_TGAC_v2_mRNA28971 102 RSAVKKAIDDGACDYWIKPLTENLIQ 127 *******************8776665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 3.7E-26 | 17 | 168 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 2.0E-26 | 17 | 151 | No hit | No description |
SMART | SM00448 | 3.3E-13 | 18 | 130 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 28.536 | 19 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 7.4E-15 | 20 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 8.62E-17 | 21 | 134 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-7 | 211 | 238 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MALSIKKELF PQQFSTKIRV LMIDHDINLL NAFEKICFQF HYSVKTCSKA SDALNLLMEK 60 KNSFDLVLIE AKMPDMNSYE FLQHVTQHIN IPVIMMCADN TRSAVKKAID DGACDYWIKP 120 LTENLIQNMW QHVARKIWKQ NKNLKLSDEL EVEVGMRKEE RYDSNLLLID PKIGVTDDSN 180 LPLIDPRIGV IDTSVKQESV ETNNVKPESS TKKTRITWTP ELHKKFVRAV MELNVDTAAA 240 VNFYQTEFEE ETSSASINQH NHIGFETNSI INPSFINTLN LHFPNPHVRN MFLAPPPGII 300 SHQIPMTQPL PMIFDNSISS CGVSHFCAAD NISDTNSNTT RLEEPQSTIY ASTKDHPFS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA28971 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2Z6MDV1 | 1e-114 | A0A2Z6MDV1_TRISU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15633 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01760.1 | 4e-39 | response regulator 14 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA28971 |