PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA27038
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 680aa    MW: 76402.8 Da    PI: 5.0781
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA27038genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3376e-1237125599
                                -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                         B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                                l+++++   + l+lp k    h +++  +k++ led+ g +  v++  +k +g++ +++GW  F k++gL+ gD+vvF ++++ 
  Tp57577_TGAC_v2_mRNA27038  37 LIRPHTDDFNVLYLPPKLN--HIMSTLIGKKINLEDSAGGRTVVTI--SKVDGSFAFKEGWDVFSKEHGLEIGDIVVFNFINKL 116
                                5556666667789998874..544567899****************..*******************************98754 PP

                                EE..EEEEE-S CS
                         B3  89 efelvvkvfrk 99 
                                +f   vk++++
  Tp57577_TGAC_v2_mRNA27038 117 NF--DVKIYDE 125
                                44..8888775 PP
2B333.19.9e-11595668590
                                -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                         B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                                lt++++lk++ l+l+ + a    g+ ++++ + l+d+ gr W v +   kk   ++l++GW +F ++n++k gD++vF++++  
  Tp57577_TGAC_v2_mRNA27038 595 LTNNHYLKLS-LCLSLSRA----GIGTKGMVVLLRDPLGRLWPVLC--HKK---TWLASGWLDFQRENNIKPGDVCVFRVVN-- 666
                                5666666665.55555555....33357899***************..555...58***********************765.. PP

                                EE CS
                         B3  89 ef 90 
                                +f
  Tp57577_TGAC_v2_mRNA27038 667 KF 668
                                33 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-1428127IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-1629128IPR015300DNA-binding pseudobarrel domain
CDDcd100173.10E-1133124No hitNo description
PROSITE profilePS5086310.6333126IPR003340B3 DNA binding domain
SMARTSM010193.5E-634126IPR003340B3 DNA binding domain
PfamPF023629.5E-940124IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-11589668IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.16591678IPR003340B3 DNA binding domain
SuperFamilySSF1019361.45E-13595675IPR015300DNA-binding pseudobarrel domain
PfamPF023622.3E-8613667IPR003340B3 DNA binding domain
CDDcd100174.48E-11613663No hitNo description
PROSITE profilePS5086310.038621679IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MGRNPQQVCL SCLHNCRFFH SHRTPTTSTS PNSFYKLIRP HTDDFNVLYL PPKLNHIMST  60
LIGKKINLED SAGGRTVVTI SKVDGSFAFK EGWDVFSKEH GLEIGDIVVF NFINKLNFDV  120
KIYDESVCER LDFSKKRNGR KRDRSGKFVR QNCIENISEN DNEDRRVRSK CTSEHIEDPC  180
YITSYIYQND DLAVFNKDPM LEEVLGTGDT SYASKLLLLG RNSYLGETDK SAYDDSSALI  240
HGQNKEQKSI MFDREAQECQ LVESLGSAEA AISKDESPSN ALEVEIFGRN NSLVDSDKGM  300
HDESPPLKLE ENKKGKSIIS QKEIEECQFA EGLGSDSEVI YGEWPNETRY LSDAQIHIGE  360
LNEVPINMTP KMCSFTDKLH ATELPKFNQD NESRFETSGG NNSVGDSGKS GYAKTSTLKL  420
EENIEGKFIM SEKEIQECLF AEGLGSDSAA EERCNKIRNF LNAQIHIGEM KEVPMNMTPK  480
IGSFNFNDIL HATELPKVVK GEFNQDIDRH FETAATVSSV VLTDNDHMNA KQEPNDTSNL  540
LNDRIHFGEI KEVPMEMTPK LGSFNDKLNA TGSPEVIEGE FNEAEAAETV TCEVLTNNHY  600
LKLSLCLSLS RAGIGTKGMV VLLRDPLGRL WPVLCHKKTW LASGWLDFQR ENNIKPGDVC  660
VFRVVNKFER IISVHINHN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA27038
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004501829.11e-103uncharacterized protein LOC101495675 isoform X1
TrEMBLA0A2K3L1670.0A0A2K3L167_TRIPR; B3 domain-containing protein
STRINGXP_004501829.11e-102(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF124762828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.12e-11B3 family protein