PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA26965 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MYB | ||||||||
Protein Properties | Length: 230aa MW: 25144.6 Da PI: 7.4372 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.2 | 7.6e-08 | 31 | 55 | 1 | 25 |
TSSS-HHHHHHHHHHHHHTTTT-HH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWk 25 +g+W++eEd +l ++v+q+G ++W+ Tp57577_TGAC_v2_mRNA26965 31 KGPWSAEEDRILTRLVEQHGARNWS 55 79**********************8 PP | |||||||
2 | Myb_DNA-binding | 59.2 | 8.9e-19 | 75 | 117 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++++Ed+ ++ a++q+G++ W+tIar ++ gRt++ +k++w++ Tp57577_TGAC_v2_mRNA26965 75 PFSPQEDQTIIAAHTQYGNR-WATIARLLP-GRTDNAVKNHWNST 117 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.84E-25 | 28 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-4 | 30 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-6 | 31 | 65 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-14 | 32 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.49 | 68 | 122 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-15 | 72 | 120 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.22E-12 | 75 | 118 | No hit | No description |
Pfam | PF00249 | 8.0E-15 | 75 | 117 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-23 | 75 | 121 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MNRSCSTTTS SSDSCSSESN PTNQNKLDRI KGPWSAEEDR ILTRLVEQHG ARNWSGKSCR 60 LRWCNQLSPT VEHRPFSPQE DQTIIAAHTQ YGNRWATIAR LLPGRTDNAV KNHWNSTLKR 120 RASCGGARGG DDSVTVAGTV SGGNERGSCS ALAFEDDPLT ALTLAPPGNV NGYCVEDREE 180 TVADRRFPSP SPESFPTGFW DVMKGVIAKE VREYVSSNFA HNNNNSGFH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-32 | 28 | 122 | 4 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA26965 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004501595.1 | 1e-103 | transcription factor MYB1-like | ||||
TrEMBL | A0A2K3MPQ3 | 1e-145 | A0A2K3MPQ3_TRIPR; Transcriptional activator MYB-like protein | ||||
STRING | XP_004501595.1 | 1e-103 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5074 | 32 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 2e-51 | myb domain protein 77 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA26965 |