PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA26513
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 210aa    MW: 24181.4 Da    PI: 10.9112
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA26513genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.3e-17116166256
                        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                +y+GVr ++ rgr+ AeIrdp +   +kr +lg+f taeeAa+a++  + +++ge
  Tp57577_TGAC_v2_mRNA26513 116 HYRGVRKRP-RGRFGAEIRDPLT---KKRLWLGTFKTAEEAARAYDLKAISFHGE 166
                                69*******.8*********843...4*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-21116174IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.4E-28116174IPR001471AP2/ERF domain
PROSITE profilePS5103222.471116173IPR001471AP2/ERF domain
CDDcd000182.69E-30116175No hitNo description
SMARTSM003804.0E-33116179IPR001471AP2/ERF domain
PfamPF008472.2E-10116166IPR001471AP2/ERF domain
PRINTSPR003676.3E-9117128IPR001471AP2/ERF domain
PRINTSPR003676.3E-9139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MARVRTTPHP RSLVPPKRTK XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  60
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXIHYRGV  120
RKRPRGRFGA EIRDPLTKKR LWLGTFKTAE EAARAYDLKA ISFHGERAVT NFPVVEDILD  180
NDAQIPPDAV SPTQILPSVV VPLVNMIED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-17116174261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-17116174564ATERF1
3gcc_A1e-17116174564ATERF1
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA26513
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03800.16e-25ERF domain protein 10