PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA25233 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 175aa MW: 20398.4 Da PI: 8.5906 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 75 | 5.7e-24 | 21 | 67 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 + ++n+qvtfskRr+g++KKA+EL+vLCd+ +a+++fs+ +kly + Tp57577_TGAC_v2_mRNA25233 21 LDKQTNKQVTFSKRRQGLFKKASELCVLCDVHAAIVVFSPADKLYCF 67 6789*****************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.6E-31 | 11 | 70 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.553 | 11 | 71 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.35E-27 | 12 | 83 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-21 | 13 | 33 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.2E-23 | 23 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-21 | 33 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-21 | 48 | 69 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MNMENQRKKT SGRKKIEIKK LDKQTNKQVT FSKRRQGLFK KASELCVLCD VHAAIVVFSP 60 ADKLYCFGEP NTDAILNSYI RGTTEFESSK LARNSQNYEE YNKQYEEALK MLEMEKKKLA 120 DAENLAKFCN TFGWWNDSID DMSSDQLEQF MVSIYELKRK LIEKADEHVM KLHM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 4e-16 | 12 | 88 | 2 | 78 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 4e-16 | 12 | 88 | 2 | 78 | Myocyte-specific enhancer factor 2B |
1tqe_R | 4e-16 | 12 | 88 | 2 | 78 | Myocyte-specific enhancer factor 2B |
1tqe_S | 4e-16 | 12 | 88 | 2 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_A | 4e-16 | 12 | 88 | 2 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_B | 4e-16 | 12 | 88 | 2 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_C | 4e-16 | 12 | 88 | 2 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_D | 4e-16 | 12 | 88 | 2 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_E | 4e-16 | 12 | 88 | 2 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_F | 4e-16 | 12 | 88 | 2 | 78 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA25233 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC174357 | 3e-32 | AC174357.6 Medicago truncatula chromosome 8 clone mth2-26c10, complete sequence. | |||
GenBank | BT142542 | 3e-32 | BT142542.1 Medicago truncatula clone JCVI-FLMt-2F17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013465623.1 | 3e-92 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2K3NXV4 | 1e-125 | A0A2K3NXV4_TRIPR; Agamous-like mads-box protein agl62-like | ||||
STRING | AES84416 | 6e-91 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65360.1 | 2e-27 | AGAMOUS-like 23 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA25233 |