PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA24833

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

M-type_MADS

Protein Properties

Length: 166aa MW: 19407.2 Da PI: 9.9472

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA24833	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	54.8	1.2e-17	14	52	6	44
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 +s+r f kR+ng++KKA+ELS+LC+++++vi++ +++ Tp57577_TGAC_v2_mRNA24833 14 NSKRREAFRKRKNGLMKKANELSTLCGIQACVIVYDQNN 52 6788889***************************98776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	5.2E-21	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	17.072	1	52	IPR002100	Transcription factor, MADS-box
CDD	cd00266	7.61E-29	2	85	No hit	No description
PRINTS	PR00404	2.6E-9	3	23	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.62E-25	3	94	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.7E-16	11	52	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.6E-9	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.6E-9	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MARKKMKLEY ITCNSKRREA FRKRKNGLMK KANELSTLCG IQACVIVYDQ NNPQAEVWPS 60 DSGVKSVLSR FRSLSEFERS KKMVDQEVFL RESIEKRHGQ LKKQREETRK KEFTDIINNY 120 IHNGEFNSNL MSKDDLAVFS SFIDENYLKE INQKMQGMKI EAQDP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	24	RKKMKLEYITCNSKRREAFRKRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA24833

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012570901.2	3e-73	agamous-like MADS-box protein AGL80
TrEMBL	A0A2K3MSM7	4e-81	A0A2K3MSM7_TRIPR; Agamous-like mads-box protein agl80-like
STRING	XP_004499447.1	1e-72	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16291	3	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	8e-31	AGAMOUS-like 80

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA24833